Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060104.seq
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 87 1e-17
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 75 4e-14
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 71 1e-12
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 71 1e-12
06_01_0539 + 3869156-3869908 69 5e-12
06_01_0529 + 3831100-3831852 69 5e-12
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 66 2e-11
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 63 2e-10
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 60 1e-09
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 60 1e-09
06_01_0479 + 3419657-3420337 57 1e-08
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 56 3e-08
12_02_1224 + 27158810-27161366,27161593-27161969 30 1.5
04_03_0137 + 11703765-11703980,11704719-11705471 29 2.6
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 29 3.4
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 29 3.4
12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998 28 6.0
07_03_1256 - 25237465-25237590,25237833-25237918,25238025-252380... 28 7.9
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 87.0 bits (206), Expect = 1e-17
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 27/145 (18%)
Frame = +1
Query: 256 LSAYQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNK 435
LS++Q+K+ + +H G++++GLTAD R+LSR++R+EC+NH + +DAP+PV RL + +K
Sbjct: 31 LSSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADK 90
Query: 436 MQ---------IC------------------TQRYDKRPLGVGLLVAGYDDQGXSYFTRL 534
Q IC TQR KRP GVGLLVAG D+ G +
Sbjct: 91 AQPDMYIFGITICPTTFLWIMSVSLMVLQVCTQRSWKRPYGVGLLVAGLDESGAHLYYN- 149
Query: 535 VRQANYFDCRAMGNREHVRSSARYL 609
NYF+ +A +++ +L
Sbjct: 150 CPSGNYFEYQAFAIGSRSQAAKTFL 174
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +2
Query: 167 MEAVKLGSATIGLKNKDYAVLIALKRAVSDCPHIRRKLF 283
MEAVK GSA +GL+++ +AVL A +A S+ +RK+F
Sbjct: 1 MEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKVF 39
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 75.4 bits (177), Expect = 4e-14
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCE--TWFCNHWSEE*GLCGVDSVETRCERLSAYQKK 276
+YD V +SP+GRL QV + + + +++ + V+ T + +K
Sbjct: 20 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEK 79
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPV---GRLISSVGNKMQIC 447
I+ IDEHIG ++SGL ADAR L + R E NHR+S+ PM V + I + +
Sbjct: 80 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEG 139
Query: 448 TQRYDKRPLGVGLLVAGYDDQGXS-YFT 528
+ RP GV LL+AG+D+ G S Y+T
Sbjct: 140 DEESMSRPFGVSLLIAGHDENGPSLYYT 167
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = +2
Query: 158 EYAMEAVKLGSATIGLKNKDYAVLIALKRAVS 253
EYA+EA+KLGS IGLK KD VL KR S
Sbjct: 38 EYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTS 69
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCET--WFCNHWSEE*GLCGVDSVETRCERLSAYQKKI 279
YD VT +SP GR+ QV + + ++ + GV+ + T L +++
Sbjct: 8 YDLSVTTFSPDGRVFQVEYAGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSNRRL 67
Query: 280 IPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 459
+ H G++++GL AD R + ++E ++ + PMPV L V + + +CT +
Sbjct: 68 HSVHRHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYW 127
Query: 460 DKRPLGVGLLVAGYDDQGXSYF 525
RP G G+++ GYD G +
Sbjct: 128 WLRPFGCGVILGGYDRDGPQLY 149
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 70.5 bits (165), Expect = 1e-12
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSE--E*GLCGVDSVETRCERLSAYQ-KK 276
YD +T++SP+GRL+QV + ++ + +C V + + L
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH 68
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 456
+ PI ++IG+ +GLTADAR L R E R+ MPV L + +K Q+ TQ
Sbjct: 69 LFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQH 128
Query: 457 YDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRA 567
RPLGV +V GYD++ + + ++F +A
Sbjct: 129 AYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKA 165
>06_01_0539 + 3869156-3869908
Length = 250
Score = 68.5 bits (160), Expect = 5e-12
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCN---GSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQK 273
+YDS T++SP+GRL+QV G+ + ++ L G V ++ + S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 274 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 453
K+ ID H+ +++G+ +DA +L R + S+ P+PV +L+ S+ + Q TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 454 RYDKRPLGVGLLVAGYD 504
RP GV L AG+D
Sbjct: 124 FGGLRPFGVSFLFAGWD 140
>06_01_0529 + 3831100-3831852
Length = 250
Score = 68.5 bits (160), Expect = 5e-12
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCN---GSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQK 273
+YDS T++SP+GRL+QV G+ + ++ L G V ++ + S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 274 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 453
K+ ID H+ +++G+ +DA +L R + S+ P+PV +L+ S+ + Q TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 454 RYDKRPLGVGLLVAGYD 504
RP GV L AG+D
Sbjct: 124 FGGLRPFGVSFLFAGWD 140
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 66.5 bits (155), Expect = 2e-11
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCE--TWFCNHWSEE*GLCGVDSVETRCERLSAYQKK 276
+YD +TV+SP G L QV + + + GV+ T + S +K
Sbjct: 73 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRK 132
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 456
I +D HI ++ +GL ADAR+L R EC +HR + + P+ V + + Q TQ
Sbjct: 133 IASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQS 192
Query: 457 YDKRPLGVGLLVAGYD 504
RP G+ L+ G+D
Sbjct: 193 GGVRPFGLSTLIVGFD 208
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 158 EYAMEAVKLGSATIGLKNKDYAVLIALKRA 247
EYA+EAV+ G+A +G++ D VL K++
Sbjct: 91 EYALEAVRKGNAAVGVRGTDTVVLGVEKKS 120
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 62.9 bits (146), Expect = 2e-10
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCETWFC--NHWSEE*GLCGVDSVETRCERLSAYQKK 276
+YD +TV+SP G L QV + + + GV+ T + S +K
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRK 62
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 456
I +D HI ++ +GL ADAR+L R EC +HR + + + V + + Q TQ
Sbjct: 63 IASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQS 122
Query: 457 YDKRPLGVGLLVAGYD 504
RP G+ L+ G+D
Sbjct: 123 GGVRPFGLSTLIVGFD 138
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 158 EYAMEAVKLGSATIGLKNKDYAVLIALKRA 247
EYA+EAV+ G+A +G++ D VL K++
Sbjct: 21 EYALEAVRKGNAAVGVRGSDTVVLGVEKKS 50
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/113 (30%), Positives = 58/113 (51%)
Frame = +1
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450
+KI + +IG+ SG+ D R+L R R + + + +PV +L+ MQ T
Sbjct: 123 QKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFT 182
Query: 451 QRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRAMGNREHVRSSARYL 609
Q RP GV LL+AGYDD G + ++ +YF +A ++V ++ +L
Sbjct: 183 QSGGVRPFGVSLLIAGYDDNGPQLY-QVDPSGSYFSWKASAMGKNVSNAKTFL 234
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/113 (30%), Positives = 58/113 (51%)
Frame = +1
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450
+KI + +IG+ SG+ D R+L R R + + + +PV +L+ MQ T
Sbjct: 86 QKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFT 145
Query: 451 QRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRAMGNREHVRSSARYL 609
Q RP GV LL+AGYDD G + ++ +YF +A ++V ++ +L
Sbjct: 146 QSGGVRPFGVSLLIAGYDDNGPQLY-QVDPSGSYFSWKASAMGKNVSNAKTFL 197
>06_01_0479 + 3419657-3420337
Length = 226
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/96 (31%), Positives = 50/96 (52%)
Frame = +1
Query: 217 LCGVDSVETRCERLSAYQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAP 396
L G V ++ + S +K+ ID H+ +++G+ +DA +L R + S+ P
Sbjct: 21 LVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEP 80
Query: 397 MPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD 504
+PV +L+ S+ + Q TQ RP GV L AG+D
Sbjct: 81 IPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWD 116
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 56.0 bits (129), Expect = 3e-08
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCET--WFCNHWSEE*GLCGVDSVETRCERLSAYQKKI 279
YD VT +SP GR+ QV + + ++ + GV+ + T L ++I
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRI 67
Query: 280 IPIDEHIGISI--------SGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNK 435
+ H G+ I +GL AD R + ++E ++ + P+ V L V +
Sbjct: 68 HSVHWHSGLDIILINVMAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASY 127
Query: 436 MQICTQRYDKRPLGVGLLVAGYDDQGXSYF 525
+ +CT + RP G G+++ GYD G +
Sbjct: 128 VHLCTLYWWLRPFGCGVILGGYDRDGPQLY 157
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 507 PGXLIFYQTCPSGQLL*LSCDGQSGARSQFSAVPILR 617
PG L+ C S ++L LSC G SGA S +P LR
Sbjct: 122 PGGLV---NCTSLEVLNLSCSGVSGAVPDLSRMPALR 155
>04_03_0137 + 11703765-11703980,11704719-11705471
Length = 322
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 237 NAINTA*SLFFRPMVAEPSFTASIAYSHLMETALRTPYCDVAIVLVP 97
NAI SL F + ++ ++A LM T L TP VAI+L+P
Sbjct: 144 NAIQLHTSLVFSTSLGR-TYVKAVALVPLMSTTLGTPTKSVAILLIP 189
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 434 KCRFVPRDMTSDPWVWACWLLVMMTRXPHILPDLSVRPTTLIVVRWAIGSTFAVQRGTYL 613
KC D+ + P WA L + P +LP++ + T + W ++ Q+G +
Sbjct: 63 KCLVADDDIEAHPLRWAPHLKTRVGVLPSLLPEVGMEFNT-VDEAWMFWVSYGGQKGFEV 121
Query: 614 EEAFSN 631
+ +SN
Sbjct: 122 RKRYSN 127
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +1
Query: 268 QKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQIC 447
+ K++ +D H + SG D + +++ +++ ++ P+ + ++
Sbjct: 32 EDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATA 91
Query: 448 TQRYDKRPLGVGLLVAGYD-DQGXSYF 525
+ K P V +L+AGYD D G S +
Sbjct: 92 LR---KNPYYVNVLLAGYDSDVGASLY 115
>12_01_1028 + 10541350-10541685,10542140-10542828,10542896-10542998
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 508 GHHNQQPTSPHPRVACHISGYKSAFC 431
GHH +PH +CH +G+ S+ C
Sbjct: 145 GHHQATCPNPHLYYSCHNTGHISSHC 170
>07_03_1256 -
25237465-25237590,25237833-25237918,25238025-25238083,
25238516-25238612,25239582-25239663,25239752-25240096
Length = 264
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVC 165
Y+ +T++SP+GRL Q+G C
Sbjct: 23 YERFITLFSPEGRLCQLGEC 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,025,798
Number of Sequences: 37544
Number of extensions: 377340
Number of successful extensions: 923
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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