Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060104.seq
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 67 1e-11
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 56 4e-08
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 49 4e-06
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_41104| Best HMM Match : p450 (HMM E-Value=0) 29 3.5
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 28 6.1
SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37) 28 8.0
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 66.9 bits (156), Expect = 1e-11
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ----- 270
YD +TV+SP G L QV + + S G+ G + V ER + +
Sbjct: 5 YDRAITVFSPDGHLFQVEYAQEAVKKG-----STAVGVRGNNIVVLGVERKAVAKLQEPR 59
Query: 271 --KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQI 444
+KI +D+H+ ++ +GLTADAR+L R EC +H+ + + P+ + + + Q
Sbjct: 60 TVRKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQR 119
Query: 445 CTQRYDKRPLGVGLLVAGYDDQG 513
TQ +RP G+ L+ G+D G
Sbjct: 120 YTQSNGRRPFGISTLIVGFDFDG 142
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 158 EYAMEAVKLGSATIGLKNKDYAVLIALKRAVSDC--PHIRRKLFLL 289
EYA EAVK GS +G++ + VL ++AV+ P RK+ L
Sbjct: 22 EYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKICTL 67
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 55.6 bits (128), Expect = 4e-08
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCET--WFCNHWSEE*GLCGVDSVETRCERLSAYQKK 276
+YD + +SP GR+ QV N + E ++ + GV+ + K+
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 456
I ID HIG++I+GL AD+R + R E N+R + +P+P+ L++ V + T
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255
Query: 457 YDKRPLGVGLLV 492
RP G + V
Sbjct: 256 SAMRPFGCRIYV 267
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 48.8 bits (111), Expect = 4e-06
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQKKI-I 282
+D +T++SP+GRL+ VC + G+ G DS + QKK+ +
Sbjct: 9 FDRHITIFSPEGRLYPSRVCFSGDQPGGLTSV----GIRGADSA------VVVTQKKVPL 58
Query: 283 PIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYD 462
PI + AD+R + R E N +Y +PV L + + Q+ TQ +
Sbjct: 59 PIPQ----------ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAE 108
Query: 463 KRPLGVGLLVAGYDDQ 510
RPLG G+++ G D++
Sbjct: 109 MRPLGCGMILIGIDEE 124
>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 325 ADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLG 477
AD+R + R E N +Y +PV L V + Q+ TQ + RPLG
Sbjct: 26 ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76
>SB_41104| Best HMM Match : p450 (HMM E-Value=0)
Length = 515
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -3
Query: 270 LICGQSLTARFNAINTA*SLFFRPMVA---EPSFTASIAYSHLMETALRTPY 124
+ICG + +FN+ + A FFR +V+ +P TA+I L A P+
Sbjct: 195 VICGITFGDKFNSTHPAFDSFFRGVVSDMDDPELTAAIGLLDLFSWAQYLPF 246
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 317 VLLQMLVC*VATCAQSVSITDILMMLQCQ---LDVSSRQLVTKC 439
VLL +L +++ + +VSI D+L+ L C+ ++ +L+T C
Sbjct: 269 VLLSLLRTGISSASPTVSIRDVLLSLTCRHITCSIALSRLITTC 312
>SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 244 RCERLSAYQK-KIIPID-EHIGISISGLTADARMLSRYMRTEC 366
R E LS Y K I+ ID +HI I L D +L Y+ EC
Sbjct: 299 RQEELSKYLKTNIVEIDKDHIVEEILKLYKDTSLLQNYLEIEC 341
>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
Length = 829
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 402 WHWSIMRISVIETLCAHVATQHTS 331
W WS+M I+V+ +C T TS
Sbjct: 6 WEWSVMTIAVMAVVCHDEVTDPTS 29
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,175,993
Number of Sequences: 59808
Number of extensions: 448396
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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