Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060104.seq
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 129 2e-30
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 73 1e-13
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 71 6e-13
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 64 1e-10
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z78415-1|CAB01671.1| 280|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 28 7.1
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 129 bits (312), Expect = 2e-30
Identities = 62/141 (43%), Positives = 90/141 (63%)
Frame = +1
Query: 91 MFRNQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ 270
MFRNQYD DVTVWSPQGRLHQV + + + + +++ LS++Q
Sbjct: 1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ 60
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450
KK+ ID H G+SI+GL +D R+L+RY++TEC + R+ + +P+ +L S+ K+Q T
Sbjct: 61 KKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANT 120
Query: 451 QRYDKRPLGVGLLVAGYDDQG 513
Q Y +RP GVG+L+AGYD G
Sbjct: 121 QYYGRRPFGVGILIAGYDKDG 141
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 73.3 bits (172), Expect = 1e-13
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 7/160 (4%)
Frame = +1
Query: 100 NQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLS--AYQ- 270
N+YD +T++SP G L QV + + S G+ G D + E+ S A Q
Sbjct: 2 NRYDRAITIFSPDGHLFQVEYAQEAVKKG-----STAVGVRGKDCIVIGVEKKSIPALQD 56
Query: 271 ----KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKM 438
+KI ID+H+ ++ +GL+ADAR+L R EC +++ + + P+ V + + N
Sbjct: 57 DRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTK 116
Query: 439 QICTQRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFD 558
Q TQ +RP G+ +L+ G+D G + Y++
Sbjct: 117 QRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYE 156
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 71.3 bits (167), Expect = 6e-13
Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 8/142 (5%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ---- 270
+YDS T++SP+GRL+QV + +H G+ + + ER + ++
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAI-----SHAGTCLGILSSEGIVVAAERKNVHKLLDD 58
Query: 271 ----KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKM 438
+K+ + ++I +++G+TADA +L ++R ++R S+ MPV +L+ ++ N+
Sbjct: 59 SVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEK 118
Query: 439 QICTQRYDKRPLGVGLLVAGYD 504
Q TQ KRP GV LL G+D
Sbjct: 119 QRYTQIGGKRPFGVSLLYIGWD 140
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 63.7 bits (148), Expect = 1e-10
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 6/163 (3%)
Frame = +1
Query: 97 RNQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHW--SEE*GLCGVDSVETRCERLSAYQ 270
R++YD V +SP+GRL QV + + + + E L + T ++
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI 64
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGN-KMQI- 444
+KI +D+HIG++ +GL AD+R L + E N ++++ + V + SV N +Q
Sbjct: 65 EKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFG 124
Query: 445 --CTQRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRA 567
+ RP GV +L AG D +G F L + DC+A
Sbjct: 125 DDDVKASMSRPFGVAMLFAGVDQEGAKLF-HLDPSGTFIDCKA 166
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Frame = +1
Query: 100 NQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAY---- 267
+ Y +T +SP G+L Q+ + + + GL D V E + +
Sbjct: 3 DHYGFSLTTFSPSGKLMQIEYALNAVK-----NGQPSVGLRAKDGVVLATENVGSVLTDD 57
Query: 268 QKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQIC 447
Q K+ I +HIG SG+ D R+L + R + + + MP +L++ + MQ
Sbjct: 58 QPKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEY 117
Query: 448 TQRYDKRPLGVGLLVAGYD 504
TQ RP G LL+AG+D
Sbjct: 118 TQSGGVRPFGASLLIAGWD 136
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQKKIIP 285
YD + +SP GR+ QV + + G GV V + Y P
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDN--AGTMIAIRGKNGVVVVADKLISSKLYTDNANP 65
Query: 286 ----IDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 453
+++++G++++G D L Y E + + PMP+ + +SV + I T
Sbjct: 66 RMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL 125
Query: 454 RYDKRPLGVGLLVAGYDDQ 510
RP G G ++ Q
Sbjct: 126 GI-SRPFGAGAFFMSWNKQ 143
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 33.1 bits (72), Expect = 0.19
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +1
Query: 217 LCGVDSVETRCERLSAYQ-KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDA 393
+ VDS + E +S+ KI+ I + + +++G AD + +R + C +
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 394 PMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYDDQGXSYF 525
+ V N + Y + L VG +VAGYD +G F
Sbjct: 144 SITVSAASKYFANTLY----GYRGQGLSVGSMVAGYDKKGPQIF 183
>Z78415-1|CAB01671.1| 280|Caenorhabditis elegans Hypothetical
protein C17G1.1 protein.
Length = 280
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 407 DVSSRQLVTKCRFV-PRDMTSDPWVWACWLLVMMTRXPHILPDLSVRPTTLIVV 565
DV ++ + C + + T + W W L+ PDLS++PTT++++
Sbjct: 80 DVVIKECASACVSIYTKSKTREGWFWTSVLMDCSEALIWSSPDLSLKPTTMVLL 133
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 RCERLSAYQ---KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDA 393
RCE SAY KK IDE I I TA+ + + ++ +C++ + HDA
Sbjct: 94 RCEE-SAYMFDTKKGYRIDE-TPIRIIDATAEVQCMEECVKIQCMSFGFHHDA 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,124
Number of Sequences: 27780
Number of extensions: 339527
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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