Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060104.seq
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 150 1e-36
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 150 1e-36
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 76 2e-14
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 76 2e-14
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 72 3e-13
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 69 4e-12
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 68 7e-12
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 68 7e-12
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 66 2e-11
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 64 6e-11
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 64 1e-10
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 62 3e-10
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P... 36 0.019
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (... 33 0.13
At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-relat... 29 2.8
At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-relat... 29 2.8
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c... 29 3.8
At4g17120.1 68417.m02578 expressed protein 28 6.6
At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containi... 28 6.6
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 150 bits (363), Expect = 1e-36
Identities = 74/173 (42%), Positives = 106/173 (61%)
Frame = +1
Query: 91 MFRNQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ 270
MFRNQYD+DVT WSP GRL QV + + + V LS++Q
Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ 60
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450
+KI +D+HIG++I+GLTAD R+LSRYMR+E +NH +++++P+PVGRL+ + +K Q+CT
Sbjct: 61 RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCT 120
Query: 451 QRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRAMGNREHVRSSARYL 609
QR KRP GVGLLV G D+ G + NYF+ +A +++ YL
Sbjct: 121 QRSWKRPYGVGLLVGGLDESGAHLYYN-CPSGNYFEYQAFAIGSRSQAAKTYL 172
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 150 bits (363), Expect = 1e-36
Identities = 74/173 (42%), Positives = 106/173 (61%)
Frame = +1
Query: 91 MFRNQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ 270
MFRNQYD+DVT WSP GRL QV + + + V LS++Q
Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ 60
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450
+KI +D+HIG++I+GLTAD R+LSRYMR+E +NH +++++P+PVGRL+ + +K Q+CT
Sbjct: 61 RKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCT 120
Query: 451 QRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRAMGNREHVRSSARYL 609
QR KRP GVGLLV G D+ G + NYF+ +A +++ YL
Sbjct: 121 QRSWKRPYGVGLLVGGLDESGAHLYYN-CPSGNYFEYQAFAIGSRSQAAKTYL 172
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 76.2 bits (179), Expect = 2e-14
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Frame = +1
Query: 97 RNQYDSDVTVWSPQGRLHQVGVCNGSCE--TWFCNHWSEE*GLCGVDSVETRCERLSAYQ 270
R +YD V +SP+GRL QV + + + ++E + V+ T +
Sbjct: 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSV 64
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPV---GRLISSVGNKMQ 441
+KI+ ID+HIG ++SGL ADAR L + R E NHR+S+ PM V + + + +
Sbjct: 65 EKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFG 124
Query: 442 ICTQRYDKRPLGVGLLVAGYDDQGXS-YFT 528
+ RP GV LL+AG+D+ G S Y+T
Sbjct: 125 EGEEESMSRPFGVSLLIAGHDENGPSLYYT 154
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 158 EYAMEAVKLGSATIGLKNKDYAVLIALKRAVS 253
EYA+EA+KLGS IG+K K+ VL KR S
Sbjct: 25 EYAIEAIKLGSTAIGVKTKEGVVLAVEKRITS 56
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 76.2 bits (179), Expect = 2e-14
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 6/150 (4%)
Frame = +1
Query: 97 RNQYDSDVTVWSPQGRLHQVGVCNGSCE--TWFCNHWSEE*GLCGVDSVETRCERLSAYQ 270
R +YD V +SP+GRL QV + + + ++E + V+ T +
Sbjct: 5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSV 64
Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPV---GRLISSVGNKMQ 441
+KI+ ID+HIG ++SGL ADAR L + R E NHR+S+ PM V + + + +
Sbjct: 65 EKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFG 124
Query: 442 ICTQRYDKRPLGVGLLVAGYDDQGXS-YFT 528
+ RP GV LL+AG+D+ G S Y+T
Sbjct: 125 EGEEESMSRPFGVSLLIAGHDENGPSLYYT 154
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 158 EYAMEAVKLGSATIGLKNKDYAVLIALKRAVS 253
EYA+EA+KLGS IG+K K+ VL KR S
Sbjct: 25 EYAIEAIKLGSTAIGVKTKEGVVLAVEKRITS 56
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 72.1 bits (169), Expect = 3e-13
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCN---GSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQK 273
+YDS T++SP+GRL+QV G+ + + L G V ++ + S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAE 63
Query: 274 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 453
K+ ID+H+ +++G+ +DA +L R + + + + PMPV +L+ S+ + Q TQ
Sbjct: 64 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQ 123
Query: 454 RYDKRPLGVGLLVAGYD 504
RP GV L AG+D
Sbjct: 124 FGGLRPFGVSFLFAGWD 140
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 68.5 bits (160), Expect = 4e-12
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSE--E*GLCGVDSVETRCERLSAYQ-KK 276
YD +T++SP+GRL QV + +T + +C V + + L
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH 68
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 456
+ PI ++IG+ +G+TADAR L + R + R+++ MPV L + +K Q+ TQ
Sbjct: 69 LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQH 128
Query: 457 YDKRPLGVGLLVAGYDDQ 510
RPLGV +V G D++
Sbjct: 129 AYMRPLGVVAMVMGVDEE 146
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 67.7 bits (158), Expect = 7e-12
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ---- 270
+YD +TV+SP G L QV + + G+ G D+V E+ S +
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKG-----NAAVGVRGTDTVVLAVEKKSTPKLQDS 57
Query: 271 ---KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ 441
+KI+ +D HI ++ +GL ADAR+L R EC +HR + + P+ V + + Q
Sbjct: 58 RSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQ 117
Query: 442 ICTQRYDKRPLGVGLLVAGYD 504
TQ RP G+ L+ G+D
Sbjct: 118 KYTQSGGVRPFGLSTLIVGFD 138
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 67.7 bits (158), Expect = 7e-12
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Frame = +1
Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ---- 270
+YD +TV+SP G L QV + + G+ G D+V E+ S +
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKG-----NAAVGVRGTDTVVLAVEKKSTPKLQDS 57
Query: 271 ---KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ 441
+KI+ +D HI ++ +GL ADAR+L R EC +HR + + P+ V + + Q
Sbjct: 58 RSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQ 117
Query: 442 ICTQRYDKRPLGVGLLVAGYD 504
TQ RP G+ L+ G+D
Sbjct: 118 KYTQSGGVRPFGLSTLIVGFD 138
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 66.1 bits (154), Expect = 2e-11
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 6/176 (3%)
Frame = +1
Query: 100 NQYDSDVTVWSPQGRLHQVG---VCNGSCETWFCNHWSEE*GLCGVDSVETRCERL---S 261
+QY +T +SP G+L Q+ GS +T S G+ V + E + +
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASN--GV--VIATEKKLPSILVDE 59
Query: 262 AYQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ 441
A +KI + +IG+ SG+ D R+L R R + + + P+PV +L+ MQ
Sbjct: 60 ASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQ 119
Query: 442 ICTQRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRAMGNREHVRSSARYL 609
TQ RP GV LLVAGYDD+G + ++ +YF +A ++V ++ +L
Sbjct: 120 EFTQSGGVRPFGVSLLVAGYDDKGPQLY-QVDPSGSYFSWKASAMGKNVSNAKTFL 174
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 64.5 bits (150), Expect = 6e-11
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 6/176 (3%)
Frame = +1
Query: 100 NQYDSDVTVWSPQGRLHQVG---VCNGSCETWFCNHWSEE*GLCGVDSVETRCERL---S 261
+QY +T +SP G+L Q+ GS +T S G+ V + E + +
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASN--GV--VIATEKKLPSILVDE 59
Query: 262 AYQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ 441
A +KI + +IG SG+ D R+L R R + + + P+PV +L+ MQ
Sbjct: 60 ASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQ 119
Query: 442 ICTQRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRAMGNREHVRSSARYL 609
TQ RP GV LLVAGYDD+G + ++ +YF +A ++V ++ +L
Sbjct: 120 EFTQSGGVRPFGVSLLVAGYDDKGPQLY-QVDPSGSYFSWKASAMGKNVSNAKTFL 174
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSE--E*GLCGVDSVETRCERLSAYQ-KK 276
YD +T++SP+GRL QV + + + +C V + + L
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSH 68
Query: 277 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 456
+ P+ +++G+ +G+TAD+R L + R E R+ + MP L + +K Q+ TQ
Sbjct: 69 LFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQH 128
Query: 457 YDKRPLGVGLLVAGYDDQ 510
RPLGV +V G D++
Sbjct: 129 AYMRPLGVVAMVLGIDEE 146
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 62.1 bits (144), Expect = 3e-10
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Frame = +1
Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCET--WFCNHWSEE*GLCGVDSVETRCERLSAYQKKI 279
YD VT +SP GR+ Q+ + + ++ + GV+ + L ++I
Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
Query: 280 IPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 459
+ H G++++GL AD R + ++E ++ + +PV L V + + +CT +
Sbjct: 68 HSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYW 127
Query: 460 DKRPLGVGLLVAGYDDQGXSYF 525
RP G G+++ GYD G +
Sbjct: 128 WLRPFGCGVILGGYDRDGPQLY 149
>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
(PRGB) identical to GB:CAA74026 from [Arabidopsis
thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
identical to cDNA proteasome subunit prgb GI:2511589
Length = 204
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +1
Query: 268 QKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQIC 447
+ KI+ +D H ++ SG D + Y++ +++ + P+ + ++
Sbjct: 32 EDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFTRGELATA 91
Query: 448 TQRYDKRPLGVGLLVAGYDDQGXS--YFTRLVRQANYFDCRAMG 573
+ K P V +L+AGYDD+ + Y+ + + D A G
Sbjct: 92 LR---KNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFG 132
>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
(PRCGA) identical to SP|O24633 Proteasome subunit beta
type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
{Arabidopsis thaliana}, cDNA proteasome subunit prcga
GI:2511571
Length = 199
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +1
Query: 268 QKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQIC 447
+ KI+ +D H ++ SG D + Y++ +++ + P+ + ++
Sbjct: 32 EDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFTRGELATA 91
Query: 448 TQRYDKRPLGVGLLVAGYDDQGXS--YFTRLVRQANYFDCRAMG 573
+ K P V +L+AGYD + + Y+ + + D A G
Sbjct: 92 LR---KNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFG 132
>At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-related
contains weak similarity to Pyridoxamine 5'-phosphate
oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
(Swiss-Prot:P28225) [Shigella flexneri]
Length = 466
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 430 NKMQICTQRYDKRPLGVGLLVAGYDDQGXSYFT 528
N M + T DK+P +L+ G+D+ G +FT
Sbjct: 347 NAMALSTANKDKKPSSRMVLLKGFDENGFVWFT 379
>At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-related
contains weak similarity to Pyridoxamine 5'-phosphate
oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
(Swiss-Prot:P28225) [Shigella flexneri]
Length = 530
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 430 NKMQICTQRYDKRPLGVGLLVAGYDDQGXSYFT 528
N M + T DK+P +L+ G+D+ G +FT
Sbjct: 358 NAMALSTANKDKKPSSRMVLLKGFDENGFVWFT 390
>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 619
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 609 ILRKHSQIHSMGFVTFQEASSF 674
+L H+ HS GFVT Q ASSF
Sbjct: 40 LLGLHNGFHSPGFVTVQPASSF 61
>At4g17120.1 68417.m02578 expressed protein
Length = 1661
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +1
Query: 244 RCERLSAYQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHD 390
R + L + ++I D G + +A + +++YM+ H Y++D
Sbjct: 619 RIDSLDDFVLELIVTDVGKGAPVGSFSAPLKQIAQYMKDNVYQHNYAND 667
>At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 799
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -3
Query: 243 RFNAINTA*SLFFRPMVAEPSFTASIAYSHLMETALRTPYCDVAIVLVPEHFKFYLI 73
+ N + A LF R M+ +AY+ L+ + R Y D+A+ LV E K Y I
Sbjct: 721 KMNNLEQAAELFDR-MIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNI 776
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,578,478
Number of Sequences: 28952
Number of extensions: 303144
Number of successful extensions: 815
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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