Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060103.seq
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    35   0.009
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    29   0.59 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   4.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.5  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   7.3  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   7.3  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.6  

>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
 Frame = +1

Query: 265 RGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAKSEDK 444
           R +LV  + +      L+I TL  ++SL+D ++    +    +  VA  CL +A+K  + 
Sbjct: 129 RPALVNFIVEIHNGFDLSIDTLPLSISLMDSYVSRRVVYCKHIQLVACVCLWIASKFHET 188

Query: 445 FSRAPTLKTLSRISGVQLCGEAFRQLEWMVGQHVRWRL-LXTDSGDIRGTNWLSMLCTDA 621
             R P L+ L          + F ++E  +   + W + + T +  I   + +  L  DA
Sbjct: 189 EDRVPLLQELKLACKNIYAEDLFIRMERHILDTLDWDISIPTPASYIPVLDPIFFLVLDA 248

Query: 622 DLDDKGIRKF 651
            +    + KF
Sbjct: 249 SMFVPNLFKF 258


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 632 SSKSASVHNILSQLVPRMSP--ESVHNSLHRTCWPTIHSSCLNASPQSWTPLIL 477
           SS  AS     S ++P++ P   S+  S     WP  H+S  N    +WTP +L
Sbjct: 75  SSLLASDEVFPSSVMPQLRPLDSSLSVSPEMDGWPWHHNSSSNPQGYAWTPSLL 128


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 544 VRWRLLXTDSGDIRGTNWLSMLCTDADL 627
           +RW  L     D+R  NWLSM CT   L
Sbjct: 782 LRWEHLYMKVQDVRKFNWLSM-CTPGAL 808


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 656  ETNFRMPLSSKSASVHNILSQLVPRMSPES 567
            E +FR  L+   ++ HN+L +  P+ +P+S
Sbjct: 1879 EISFRKSLALSKSAYHNLLVRDSPKFNPDS 1908


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/69 (20%), Positives = 27/69 (39%)
 Frame = +2

Query: 5   TRLNFYLHFGEMETLNMAKLNLSSVRPHASTESGPKVEVADPKMNPVVLTDYDDDYHCEY 184
           TRLN  + F +   +N     L      + T         DP+   + LT + +     +
Sbjct: 53  TRLNELIGFEDEVVINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFLESNATAF 112

Query: 185 RDEIWKSLL 211
            +E+W  ++
Sbjct: 113 TEELWSLII 121


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 445 FSRAPTLKTLSRISGVQLCGEAFRQLEWMVGQHVRWRLL 561
           F  AP +KT+S I  ++   ++FR+ E + G   ++++L
Sbjct: 16  FQIAPDVKTISNIQDIRAQIQSFREKE-LEGSQTKFKVL 53


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 62  LNLSSVRPHASTESGPKVEVADPKMNP 142
           LN+SSV+    TE+ P  E   P  +P
Sbjct: 184 LNISSVKQDRITEANPTCEKRKPSRSP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,867
Number of Sequences: 5004
Number of extensions: 50026
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)