Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060103.seq
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)               50   1e-06
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_46975| Best HMM Match : PSCyt1 (HMM E-Value=7.8)                    31   1.1  
SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08)                    30   1.4  
SB_29493| Best HMM Match : PH (HMM E-Value=0.48)                       30   1.9  
SB_44846| Best HMM Match : UME (HMM E-Value=2.6)                       29   3.3  
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)                 28   5.8  
SB_56750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_54201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)                      28   7.7  
SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)            28   7.7  

>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
          Length = 279

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/106 (27%), Positives = 53/106 (50%)
 Frame = +1

Query: 241 SAVTSLQFRGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLS 420
           +A   L+ R  LV  L    +KLG +   +H A+  +D FMD   ++  +L  +AL  L 
Sbjct: 53  AASPQLKIRRYLVDWLAVIGEKLGSSHGVVHLAIYYMDFFMDKFIIQESQLHLLALTALL 112

Query: 421 LAAKSEDKFSRAPTLKTLSRISGVQLCGEAFRQLEWMVGQHVRWRL 558
           LAAK ++  ++ P + TL++          + Q+E ++ +   W +
Sbjct: 113 LAAKFDENENQIPDISTLNKFVNNTYQHAEYHQMELLLLEFFNWNI 158


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 482  SAVSSSAGKHSDSSNGW*ASTCDGG-YCXPTPVTFAALIGSVCCAPTLTWTTKASGS 649
            S V    G H DS   W    C  G YC PT ++   +I  V C P   +  K +GS
Sbjct: 1822 SPVRCDPGFHQDSPGQWACKECPAGFYCDPTGLS-TGVIHPVTCTPG-NYCPKQTGS 1876


>SB_46975| Best HMM Match : PSCyt1 (HMM E-Value=7.8)
          Length = 363

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 5   TRLNFYLHFGEMETLN-MAKLNLSSVRPHASTESGPKVEVADPKMNPV---VLTDYDDDY 172
           T ++  L+F    +L+ + +L L   R    T S PK EV   K +PV   +  + D  Y
Sbjct: 69  TPIDMKLNFSSNSSLSYLDRLVLKKHREEGRTASSPKSEVNTKKNSPVSEELQNETDQGY 128

Query: 173 HCEYRDEIWKSL 208
              YR EI++SL
Sbjct: 129 GINYR-EIFQSL 139


>SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08)
          Length = 480

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 278 TREPRNCSEVTADESVISLPPAQVSSSISHPCTHNGN 168
           T+ P NC  V A E+     P +++   S PC + GN
Sbjct: 171 TQPPSNCYTVNASEARQYFVPNEINECDSSPCKNGGN 207


>SB_29493| Best HMM Match : PH (HMM E-Value=0.48)
          Length = 1064

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 210 LSRRQRNHRFICSHLAAIPRFPSTTTS*CHKE 305
           LSRR R+H  + + +   P  PSTTTS   K+
Sbjct: 404 LSRRGRHHEEVTAPVPLTPELPSTTTSEVFKD 435



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 210 LSRRQRNHRFICSHLAAIPRFPSTTTS*CHKE 305
           LSRR R+H  + + +   P  PSTTTS   K+
Sbjct: 736 LSRRGRHHEEVTAPVPLTPELPSTTTSEVFKD 767


>SB_44846| Best HMM Match : UME (HMM E-Value=2.6)
          Length = 133

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 53  MAKLNLSSVRPHASTESGPKVEVADPK 133
           +A+ NLSSV PHA  +   K +VA PK
Sbjct: 107 LARWNLSSVEPHALPQGITKEQVALPK 133


>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 184  QG*DMEELT*AGGREITDSSAVTSLQFRGSLVQQLRDATKKL--GLTIATLHSA 339
            QG D  +    GG+ I +   +TSL +R  +  ++R   K+    LT+ TL S+
Sbjct: 987  QGQDCPDSEDEGGKVIAEYYKITSLSWRNVICSEMRQQRKRAMPELTLKTLFSS 1040


>SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)
          Length = 901

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 74  SVRPHASTESGPKVEVADPKMNPVVLTDYDDDYHCEYRDE----IWKSLLEQEAEKSPIH 241
           S+RPH      P +    P      L+D+    H  Y         K+L +QE E  P  
Sbjct: 532 SIRPHPRHMLNPMIRRRMPYRQ---LSDFLSAKHLGYPSSRLFLTGKTLRQQELE--PAR 586

Query: 242 LQSPRCNSEVP*YNNFVMPQRN 307
           L   RC + +P   +F+ PQ +
Sbjct: 587 LMGRRCKTLLPVAGSFLQPQHS 608


>SB_56750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 554 LHRTCWPTIHSSCLNASPQSWTPLILDRVF 465
           L+ T WP  H + L  S +SW  L L R F
Sbjct: 39  LNLTSWPPGHRANLRQSAESWIKLELKRKF 68


>SB_54201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +2

Query: 53  MAKLNLSSVRPHASTESGPKVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLEQEAEKS 232
           +AK      R     E   +++  D   N  +  D D+ Y+ +  DE+W      +  K+
Sbjct: 171 LAKQRRREERARRVRERAKRIQDGDDMGN--IEVDPDETYNADEEDEMWDLEPSAQTSKA 228

Query: 233 PIHLQSPRCNSE 268
               QSP  +SE
Sbjct: 229 SSFQQSPDPDSE 240


>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 143 VVLTDYDDDYHCEYRDEIWKSLLEQEAEKSPIHLQ 247
           V +TD    Y CE + E   S  E   EK+P H+Q
Sbjct: 70  VSVTDLVSQYWCEQQMEYGYSCAELLPEKTPTHIQ 104


>SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 388 RLTHVALACLSLAAKSEDKFSRAPTLKTLSRISGVQL 498
           RLTH+A A +SL  ++ D   R   L T  R  GVQ+
Sbjct: 150 RLTHIAHARISLRERNPDAL-RLSILSTAPRRDGVQM 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,253,882
Number of Sequences: 59808
Number of extensions: 405696
Number of successful extensions: 1215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)