Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060103.seq
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical p... 31 0.54
U00055-10|AAN65306.1| 181|Caenorhabditis elegans Hypothetical p... 31 0.54
U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.54
U00055-8|AAL06043.1| 311|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical pr... 30 1.3
U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein. 30 1.3
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 30 1.7
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 29 2.9
AF098995-7|AAC67481.1| 253|Caenorhabditis elegans F-box b prote... 29 2.9
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 29 2.9
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 28 5.1
U41104-6|AAK77633.2| 419|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal embr... 28 5.1
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81039-9|CAE17687.1| 121|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical
protein R02F2.1d protein.
Length = 290
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 295 ATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAK-SEDKFSRAPTLKT 471
A K++GL + AVS+ D + + ++ + VA+ LS+A K ED AP
Sbjct: 51 AAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAPVF-- 108
Query: 472 LSRISGVQLCGEAFRQLEWMVGQHVRW 552
L R+ ++ + +++E + + +RW
Sbjct: 109 LGRLR-LEYSAQELKRMEIKILEVLRW 134
>U00055-10|AAN65306.1| 181|Caenorhabditis elegans Hypothetical
protein R02F2.1c protein.
Length = 181
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 295 ATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAK-SEDKFSRAPTLKT 471
A K++GL + AVS+ D + + ++ + VA+ LS+A K ED AP
Sbjct: 70 AAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAPVF-- 127
Query: 472 LSRISGVQLCGEAFRQLEWMVGQHVRW 552
L R+ ++ + +++E + + +RW
Sbjct: 128 LGRLR-LEYSAQELKRMEIKILEVLRW 153
>U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical
protein R02F2.1a protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 295 ATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAK-SEDKFSRAPTLKT 471
A K++GL + AVS+ D + + ++ + VA+ LS+A K ED AP
Sbjct: 70 AAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAPVF-- 127
Query: 472 LSRISGVQLCGEAFRQLEWMVGQHVRW 552
L R+ ++ + +++E + + +RW
Sbjct: 128 LGRLR-LEYSAQELKRMEIKILEVLRW 153
>U00055-8|AAL06043.1| 311|Caenorhabditis elegans Hypothetical
protein R02F2.1b protein.
Length = 311
Score = 31.5 bits (68), Expect = 0.54
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 295 ATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAK-SEDKFSRAPTLKT 471
A K++GL + AVS+ D + + ++ + VA+ LS+A K ED AP
Sbjct: 70 AAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAPVF-- 127
Query: 472 LSRISGVQLCGEAFRQLEWMVGQHVRW 552
L R+ ++ + +++E + + +RW
Sbjct: 128 LGRLR-LEYSAQELKRMEIKILEVLRW 153
>Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical
protein ZK507.6 protein.
Length = 485
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = +1
Query: 226 EITDSSAVTSLQFRGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVA 405
E D + + + R L+ D K+ T H AVSL+D + + R V
Sbjct: 232 ECFDIQSQVNEEMRTILIDWFSDVVKEYNFQKETFHLAVSLVDRALSMFNIDKMRFQLVG 291
Query: 406 LACLSLAAKSEDKF 447
+ +A K E+ F
Sbjct: 292 TTSMMIAVKYEEIF 305
>U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein.
Length = 485
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = +1
Query: 226 EITDSSAVTSLQFRGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVA 405
E D + + + R L+ D K+ T H AVSL+D + + R V
Sbjct: 232 ECFDIQSQVNEEMRTILIDWFSDVVKEYNFQKETFHLAVSLVDRALSMFNIDKMRFQLVG 291
Query: 406 LACLSLAAKSEDKF 447
+ +A K E+ F
Sbjct: 292 TTSMMIAVKYEEIF 305
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 337 AVSLLDLFMDAHRLRADRLTHVALACLSLAAKSED 441
A +L + F + H L+ VA AC+ LA K+ED
Sbjct: 77 AATLFNRFFNVHSLKRCDFRDVAAACVFLAGKNED 111
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 35 EMETLNMAKLNLSSVRPHASTESGPKVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLE 214
E+ +++K++ S ++S KVE++ V + DDD ++ DEI +
Sbjct: 131 ELSKASVSKVSTSKTL-FKESKSPRKVEISRKTNKARVFQEEDDDDEDDFSDEIDEKFYS 189
Query: 215 QEAEKSPIHLQSP 253
+ +++PI ++ P
Sbjct: 190 KTNKRTPITIKIP 202
>AF098995-7|AAC67481.1| 253|Caenorhabditis elegans F-box b protein
protein 25 protein.
Length = 253
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 163 IIISQYHRVHLRVCYLNFWAAFGRSMWPXTR*IQLSHIQGFHL 35
I + YHR+ L +L + +G M P + I + +IQG HL
Sbjct: 156 IELQDYHRLKL-FPFLKWLTVYGMDMAPISTTILIQNIQGLHL 197
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 347 KDTAECSVAIVRPNFFVASRSCCTREPRNCSEV 249
+DT CS + RP +F C E + C+ +
Sbjct: 5 EDTKYCSTRVCRPGYFNCGNGLCIPEQKVCNRI 37
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 608 NILSQLVPRMS---PESVHNSLHRTCWPTIHSSCLNASPQSWTPLILD 474
N +QL P+ + P + N+ + C PT+ S +PQS+ P++LD
Sbjct: 281 NSCAQLSPQPTEGCPTNCRNTCNEVCAPTVASQPSTQAPQSY-PVLLD 327
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 269 PRNCSEVTADESVISLPPAQVSSSISHPCTHNGNRHHNQSI 147
P + +V+A S+ Q S+++ HP HN + H++S+
Sbjct: 97 PIHTRQVSAPNLHTSVNNGQSSATVPHPSHHNVHHQHSKSV 137
>U41104-6|AAK77633.2| 419|Caenorhabditis elegans Hypothetical
protein T12C9.7 protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/97 (23%), Positives = 43/97 (44%)
Frame = +1
Query: 232 TDSSAVTSLQFRGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALA 411
T +S++ R ++ + +L ++ LH +LLD +D + L +A
Sbjct: 149 TQQFCPSSIEDRQRVLLNIFSRRFQLKVSSEALHLGAALLDKCLDMMSVNKASLDELAAV 208
Query: 412 CLSLAAKSEDKFSRAPTLKTLSRISGVQLCGEAFRQL 522
L +A+K ED T+ I GV+L ++ Q+
Sbjct: 209 TLVIASKLED-----VNCLTIENIIGVELIEKSAAQM 240
>AF106580-1|AAK73890.3| 582|Caenorhabditis elegans Abnormal
embryonic partitioningof cytoplasm protein 2, isoform b
protein.
Length = 582
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 239 ESVISLPPAQVSSSISHPCTHNGNRHHNQSI 147
+S + +PP ++ S+S P HN + H + S+
Sbjct: 149 KSSLKIPPEPLNHSLSPPGFHNSHHHRDDSL 179
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Frame = -3
Query: 353 SSKDTAECSVAIVRPNFFVASRSC----CTREPR----NCSEVTADESVISLPPAQVSSS 198
SS A C AI N + + C C RE NC + +S+ + A S
Sbjct: 1627 SSFTGAFCETAIDESNCALDEKDCVFGLCRRENAQVYCNCYDGYMKDSLGNCTLAWDMCS 1686
Query: 197 ISHPCTHNGNRHHNQSI 147
+++PC NG + NQ+I
Sbjct: 1687 LNNPCQQNGYCNFNQNI 1703
>Z81039-9|CAE17687.1| 121|Caenorhabditis elegans Hypothetical
protein C25D7.15 protein.
Length = 121
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 542 TCDGGYCXPTPVTFAALIGSV 604
TC+G YC +P +F+ LI V
Sbjct: 91 TCNGDYCNSSPTSFSILISIV 111
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 451 RAPTLKTLSRISGVQLCGEAFRQLEWMVGQHVRWRLLXTDSGDI 582
R P K L+R G ++C A+ +L+ W + D G +
Sbjct: 1060 RVPASKNLTRCHGAEICVIAYDELKTAYMMDRVWNYIVLDEGHV 1103
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 451 RAPTLKTLSRISGVQLCGEAFRQLEWMVGQHVRWRLLXTDSGDI 582
R P K L+R G ++C A+ +L+ W + D G +
Sbjct: 1060 RVPASKNLTRCHGAEICVIAYDELKTAYMMDRVWNYIVLDEGHV 1103
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 281 CTREPRNCSEVTADESVISLPPAQVSSSIS 192
C RE N +T D +IS P A VSS++S
Sbjct: 108 CMREIHNRELITGDFMLISNPTAVVSSTLS 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,675,423
Number of Sequences: 27780
Number of extensions: 293102
Number of successful extensions: 939
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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