Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060103.seq
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.84 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.84 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 353 SSKDTAECSVAIVRPNFFVASRSCCTREPRNCSEVTADESVISLPPAQVSSSISHPCTHN 174
           S  D A  +  I  P   V + S  +  PR  S  ++  S  S PPA+ +++   P   N
Sbjct: 489 SGYDGAASTAVIHEP--VVETNSSPSPNPRIASAPSSSTS--SSPPAKGAAAAGQPSKRN 544

Query: 173 GNRHHNQSI 147
           G   + Q +
Sbjct: 545 GGETNKQEL 553


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 512 NASPQSWTPLILDR 471
           NASP +W+P  LDR
Sbjct: 514 NASPTTWSPADLDR 527


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 17  FYLHFGEMETLNMAKLNLSSVRPHASTESGPKVEV 121
           FY+ F ++ ++++  L+ S    H S   G  VE+
Sbjct: 296 FYMAFSKLYSVSVVSLDKSLEVNHISARVGDNVEI 330


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 551 HRTCWPTIHSSCL 513
           H  C P IH SC+
Sbjct: 477 HSRCPPEIHKSCI 489


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 551 HRTCWPTIHSSCL 513
           H  C P IH SC+
Sbjct: 477 HSRCPPEIHKSCI 489


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 384 DTSASLPLSGMQEELHTILKEL 405


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 384 DTSASLPLSGMQEELHTILKEL 405


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 384 DTSASLPLSGMQEELHTILKEL 405


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 384 DTSASLPLSGMQEELHTILKEL 405


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 384 DTSASLPLSGMQEELHTILKEL 405


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 384 DTSASLPLSGMQEELHTILKEL 405


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 452 DTSASLPLSGMQEELHTILKEL 473


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 656 ETNFRMPLSSKSASVHNILSQL 591
           +T+  +PLS     +H IL +L
Sbjct: 452 DTSASLPLSGMQEELHTILKEL 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,475
Number of Sequences: 438
Number of extensions: 3231
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)