Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060103.seq
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 36 0.018
At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical... 36 0.031
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc... 36 0.031
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 35 0.041
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc... 35 0.055
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin... 32 0.39
At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to SP|... 31 0.51
At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42... 31 0.67
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 31 0.89
At3g50070.1 68416.m05474 cyclin family protein similar to cyclin... 31 0.89
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR... 30 1.2
At5g66055.2 68418.m08322 ankyrin repeat protein / AKRP (AKR) ide... 29 2.1
At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR) ide... 29 2.1
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s... 29 2.7
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 29 2.7
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea... 29 3.6
At1g16650.1 68414.m01994 expressed protein 29 3.6
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 4.8
At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH) domain... 28 4.8
At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to SP|... 28 6.3
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 27 8.3
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 27 8.3
At4g20090.1 68417.m02938 pentatricopeptide (PPR) repeat-containi... 27 8.3
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 36.3 bits (80), Expect = 0.018
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Frame = +1
Query: 337 AVSLLDLFMDAHRLRADR---LTHVALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGE 507
A++ LD F+ H L + + L +A+ACLSLAAK E+ + P L L ++ Q E
Sbjct: 102 AMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEE--TEVPMLIDL-QVGDPQFVFE 158
Query: 508 A--FRQLEWMVGQHVRWRL 558
A +++E +V ++WRL
Sbjct: 159 AKSVQRMELLVLNKLKWRL 177
>At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical to
SP|P42751 Cyclin delta-1 {Arabidopsis thaliana}
Length = 339
Score = 35.5 bits (78), Expect = 0.031
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Frame = +1
Query: 325 TLHSAVSLLDLFMDAHRLRADR---LTHVALACLSLAAKSEDKFSRAPTLKTLSRISGVQ 495
T + AV+ +D F+ A RL + +A+ACLSLAAK E+ P+L +++GV+
Sbjct: 102 TAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEIL--VPSLFDF-QVAGVK 158
Query: 496 LCGEA--FRQLEWMVGQHVRWRL 558
EA +++E +V + WRL
Sbjct: 159 YLFEAKTIKRMELLVLSVLDWRL 181
>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397, cyclin A-like protein
[Nicotiana tabacum] GI:1064927; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 460
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +1
Query: 265 RGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAKSED 441
RG LV L + +++ L TL+ V+ +D ++ + + +L + +AC+ +AAK E+
Sbjct: 228 RGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNVISRQKLQLLGVACMMIAAKYEE 286
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 35.1 bits (77), Expect = 0.041
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +1
Query: 337 AVSLLDLFMDAHRLRADRLTHV---ALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGE 507
A++ LD F+ H L + + V A+ACLSLAAK E+ + P L L ++ E
Sbjct: 93 AMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEE--TNVPELMQL-QVGAPMFVFE 149
Query: 508 A--FRQLEWMVGQHVRWRL 558
A +++E +V +RWRL
Sbjct: 150 AKSVQRMELLVLNVLRWRL 168
>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
cyclin-like protein [Arabidopsis thaliana] GI:20302467;
low similarity to SP|P30278 G2/mitotic-specific cyclin 2
(B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 578
Score = 34.7 bits (76), Expect = 0.055
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 259 QFRGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADR-LTHVALACLSLAAKS 435
+ R +VQ + +GL TL V LLD F+ +++R L V +A L+LA +
Sbjct: 385 RLRSIMVQWIVKQCSDMGLQQETLFLGVGLLDRFLSKGSFKSERTLILVGIASLTLATRI 444
Query: 436 EDKFSRAPTLKTLSRISGVQLCGEAFRQLEWMVGQHVRWR 555
E+ K I ++ +EW+V + + ++
Sbjct: 445 EENQPYNSIRKRNFTIQNLRYSRHEVVAMEWLVQEVLNFK 484
>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 367
Score = 31.9 bits (69), Expect = 0.39
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Frame = +1
Query: 310 GLTIATLHSAVSLLDLFMDAHRLRADR---LTHVALACLSLAAKSEDKFSRAPTLKTLSR 480
G T T AV+ D FM + +L+ D+ VA+A LSLAAK E+ + P L L +
Sbjct: 111 GFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKVEE--IQVPLLLDL-Q 167
Query: 481 ISGVQLCGEA--FRQLEWMVGQHVRWRL 558
+ + EA +++E ++ ++WR+
Sbjct: 168 VEEARYLFEAKTIQRMELLILSTLQWRM 195
>At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to
SP|P42753 Cyclin delta-3 {Arabidopsis thaliana}
Length = 376
Score = 31.5 bits (68), Expect = 0.51
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +1
Query: 337 AVSLLDLFMDAHRLRADR---LTHVALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGE 507
A++ LD F+ ++ L+ D+ L V++ACLSLAAK E+ ++ P L ++ + E
Sbjct: 111 AITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKVEE--TQVPLLLDF-QVEETKYVFE 167
Query: 508 A--FRQLEWMVGQHVRWRL 558
A +++E ++ + W++
Sbjct: 168 AKTIQRMELLILSTLEWKM 186
>At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42753
Cyclin delta-3 {Arabidopsis thaliana}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 323
Score = 31.1 bits (67), Expect = 0.67
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Frame = +1
Query: 241 SAVTSLQFRGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAH--RLRADR---LTHVA 405
S TS R + + + G T + A+S DLF+ L+ D + ++
Sbjct: 64 SKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLS 123
Query: 406 LACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGEAFRQLEWMVGQHVRWRL 558
+ACLSLAAK E++ P L + + R+ E ++ + W++
Sbjct: 124 VACLSLAAKMEERI--VPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWKM 172
>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
3a [Arabidopsis thaliana] GI:509425; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
for cyclin 3b protein GI:728520
Length = 436
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 265 RGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAKSED 441
R L+ L + + L TL+ V+L+D F+ + RL + ++C+ +A+K E+
Sbjct: 206 RKILIDWLVEVSDDYKLVPDTLYLTVNLIDRFLSNSYIERQRLQLLGVSCMLIASKYEE 264
>At3g50070.1 68416.m05474 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300, CycD3;2
[Lycopersicon esculentum] GI:6434199; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 361
Score = 30.7 bits (66), Expect = 0.89
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +1
Query: 310 GLTIATLHSAVSLLDLFMDAHRLRADR--LTHV-ALACLSLAAKSEDKFSRAPTLKTLSR 480
G T AV+ D F+ + + + D+ ++ + ALACLSLAAK E+ R P L +
Sbjct: 101 GFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEE--IRVPFLLDF-Q 157
Query: 481 ISGVQLCGEA--FRQLEWMVGQHVRWRL 558
+ + EA +++E +V + WR+
Sbjct: 158 VEEARYVFEAKTIQRMELLVLSTLDWRM 185
>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1170
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 286 LRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAKSEDKFSRAPTL 465
LR K+GL +A + LLD +D+ + R+T + SL S+D S A +
Sbjct: 140 LRSVPSKIGLNLANFRNEKELLDKIIDSIKKVLARITRASRVAESLNGISKD--SEAKNV 197
Query: 466 KTLS 477
T S
Sbjct: 198 DTFS 201
>At5g66055.2 68418.m08322 ankyrin repeat protein / AKRP (AKR)
identical to ankyrin repeat protein (AKRP) [Arabidopsis
thaliana] SWISS-PROT:Q05753
Length = 359
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 626 KSASVHNILSQLVPRMSPESVHNSLHRTCWPTIHSSCLNASPQSWTP 486
+S S + +S L+PR SP + SLH +PT S +S S P
Sbjct: 2 QSLSTPHTISLLLPRTSPSRLSPSLHSLAFPTRLRSLSYSSQTSILP 48
>At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR)
identical to ankyrin repeat protein (AKRP) [Arabidopsis
thaliana] SWISS-PROT:Q05753
Length = 435
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 626 KSASVHNILSQLVPRMSPESVHNSLHRTCWPTIHSSCLNASPQSWTP 486
+S S + +S L+PR SP + SLH +PT S +S S P
Sbjct: 2 QSLSTPHTISLLLPRTSPSRLSPSLHSLAFPTRLRSLSYSSQTSILP 48
>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
GI:6273457; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 572
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +2
Query: 2 GTRLNFYLHFGEMETLNM-AKLNLSSVRPHASTESGPKVEVADPKMNPVVLTDYD--DDY 172
G RLN+ LHFGE + K L V P + + + L + + DD
Sbjct: 283 GARLNWLLHFGESPKWDKDVKFILVDVSEEEIELRKPHLGIVGDAKTVIGLLNREIKDDP 342
Query: 173 HCEYRDEIWKSLLEQEAEKSPIHLQSPRCNSEVP*YNNFVMPQR 304
C + W + ++A+++ ++ VP NF+ P R
Sbjct: 343 FCLGKSNSWVESISKKAKENGEKMEIQLAKDVVP--FNFLTPMR 384
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 176 CEYRDEIWKSLLEQEAEKSPIHLQSPRCNSEV 271
CE RDE LLE+ +E + LQSPRC ++V
Sbjct: 182 CENRDE--NRLLEKNSEDN--ELQSPRCETQV 209
>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
Length = 1344
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 77 VRPHASTESGPKVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLEQEAEKSPI 238
VR A G +++ VV ++DDD D I KSLL+ ++ SP+
Sbjct: 654 VRAAAVFALGTLLDIGFDSNKSVVEDEFDDDEKIRAEDAIIKSLLDVVSDGSPL 707
>At1g16650.1 68414.m01994 expressed protein
Length = 521
Score = 28.7 bits (61), Expect = 3.6
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Frame = +1
Query: 223 REITDSSAVTSLQFRGSLVQQLRDATKKLGLTIATLHS----AVSLLDLFMDAHRLRADR 390
++ TDSS + S Q DA + L +A LH+ +V++L FM+ ++A
Sbjct: 232 KDETDSSGSALNEEGQSRSQSSSDANRSCSLVLAGLHACGDLSVTMLRTFMECEEVKA-- 289
Query: 391 LTHVALACLSLAAK--SEDKFSRAP-TLKTLSRISGVQLCGEAFRQLEWMVGQHVRWRLL 561
L + C +L ++ SED S+ + R G L G+ R L + RW L
Sbjct: 290 LVSIG-CCYNLLSEKSSEDSCSKCGYPMSAGLRSLGFSL-GKNARDLACQSAE--RWSSL 345
Query: 562 XTDSG 576
D+G
Sbjct: 346 GEDAG 350
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 236 SVISLPPAQVSSSISHPCTHNGNRHHN 156
S ISLPPA + H H RHH+
Sbjct: 160 SPISLPPAPAPAPTKHKRKHKHKRHHH 186
>At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related similar to clathrin assembly protein
AP180 (GI:6492344) [Xenopus laevis]; contains Pfam
profile: PF01417 ENTH domain, suggesting involvement in
endocytosis or cytoskeletal machinery
Length = 379
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 113 VEVADPKMNPVVLTD----YDDDYHCEYRDEIWKSLLEQEAEKSPIHLQSPRCNSEVP*Y 280
V + PK ++TD ++DDY C R + W+ + E E ++ HL P P Y
Sbjct: 314 VVLEQPKKLQTIITDKWEIFEDDYRCFDRKDKWE-IFEDEYHQN--HL--PLITMNQPVY 368
Query: 281 NNFVMP 298
+ MP
Sbjct: 369 ITYTMP 374
>At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to
SP|P42752 Cyclin delta-2 {Arabidopsis thaliana}
Length = 361
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +1
Query: 337 AVSLLDLFMDAHRLRADR---LTHVALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGE 507
+++ LD F+ ++ L D+ +A++CLSLA+K E+ + P + L ++ + E
Sbjct: 121 SMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEE--TDVPHIVDL-QVEDPKFVFE 177
Query: 508 A--FRQLEWMVGQHVRWRL 558
A +++E +V + WRL
Sbjct: 178 AKTIKRMELLVVTTLNWRL 196
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 27.5 bits (58), Expect = 8.3
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 370 HRLRADRLTHVALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGE-AFRQLEWMVGQHV 546
H LRA+R+ H+ CL A + + F R+ K ++L E A R +G +V
Sbjct: 335 HFLRANRIDHIYKVCLPSNALALEMFCRSAFKKNSPPDDFLELSSEVALRAGNLPLGLNV 394
Query: 547 RWRLLXTDSGDIRGTNWLSMLCTDADLDDK 636
L ++ I W+ ML LD K
Sbjct: 395 ----LGSNLRGINKGYWIDMLPRLQGLDGK 420
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 14 NFYLHFGEMETLNMAKLNLSSVRPHASTESGPKVE--VADPKMNP 142
+FY F E+ + +M+ S P+A TE+G + A PK P
Sbjct: 732 SFYTSFPELSSPHMSGTGTSFKNPNAQTENGVSAQGTAAAPKSPP 776
>At4g20090.1 68417.m02938 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 660
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 560 CXPTPVTFAALIGSVCCAPTLTWTTKASGSLF 655
C P+PV + LI +C LT TK ++F
Sbjct: 253 CSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMF 284
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,815
Number of Sequences: 28952
Number of extensions: 275756
Number of successful extensions: 883
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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