Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060102.seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   3.3  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   3.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   3.3  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    26   5.8  

>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 352 FDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISD 462
           FD  ++LP  N+  +D+K F+++     D  L  I +
Sbjct: 7   FDNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDE 43


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 352 FDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISD 462
           FD  ++LP  N+  +D+K F+++     D  L  I +
Sbjct: 7   FDNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDE 43


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +1

Query: 394 DDVKKFVEKLGNEEDDKLAVISDVESIITFYCKS 495
           +D+ KF+E + N  D+K+ +I ++  +  +  K+
Sbjct: 478 EDIPKFIEYVRNSHDNKVFLIENLRHMFPYVTKN 511


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 349 LFDEIFDLPNQNELRDDVKKFVEKLGNEED 438
           L +   D+P ++ +R+D++K ++ L   ED
Sbjct: 245 LEETAIDVPAKDSVREDIQKLIDDLYENED 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,255
Number of Sequences: 5004
Number of extensions: 51712
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)