Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060102.seq
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414...    31   1.1  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    29   4.5  
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    28   6.0  

>10_06_0139 -
           11139004-11139031,11139300-11141017,11141408-11141477,
           11142520-11143361
          Length = 885

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 400 VKKFVEKLGNEEDDKLAVISDVES 471
           V +F+E+L N+ED KL V+S V S
Sbjct: 187 VSEFIERLANDEDQKLKVVSVVGS 210


>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
            20597578-20597730,20597816-20597927,20598022-20598352,
            20598524-20598737,20598842-20598931,20599669-20599924,
            20600029-20600141,20600733-20600831,20600915-20600980,
            20601018-20601167,20601278-20601368,20601710-20601749,
            20603888-20605247,20605478-20605507,20605834-20605885,
            20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +1

Query: 217  VCSSRWMYRTRNYALTKGKKIPVSLRPDVWLLC--LNCQDAGNQLLLFDEIFDLPNQNEL 390
            VCS       R Y LT  KK  V     V+         D   +LLLF  + DL  +  L
Sbjct: 1188 VCSDEDNVEVRRYCLTSTKKCAVKTEVVVFSAAESKRYSDTMLELLLF-ALEDL--KMVL 1244

Query: 391  RDDVKKFVEKLGNEEDDKLAVISDVESIITF 483
            +      +  LGN ED  L ++++V++ + F
Sbjct: 1245 KSQESDLLIGLGNAEDVVLKLVNEVQAGLIF 1275


>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
            13266361-13266623,13267637-13267847,13268420-13268590,
            13268671-13268748,13269275-13269520,13269763-13271868,
            13272122-13273904,13274113-13274216,13274752-13275108,
            13275210-13275328,13276175-13276436,13276669-13276893,
            13277075-13277214,13278087-13278159,13278431-13278532,
            13278647-13279018,13279183-13279230,13279516-13279900,
            13280440-13280558
          Length = 2574

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 137  LSTNLNLSCQTKQMAGDDDDTWLIELESALLDGCTAQEIMH*RKEKK 277
            LS    +S    Q    DD TW++    A L  C  +E+++ R  +K
Sbjct: 2057 LSVGSEISADETQTPKSDDATWIVTGSRASLVKCLKKELVNVRNGRK 2103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,328
Number of Sequences: 37544
Number of extensions: 276214
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)