Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060102.seq
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_25305| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.092
SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)                       30   1.5  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   2.6  
SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)                    29   2.6  

>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
 Frame = +1

Query: 259 LTKGKKIPVSLRPDVWL----LCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLG 426
           L + + IP   R D+W     +CLN     + L  +D   DL  Q+++R+D ++   KL 
Sbjct: 33  LCRSRTIPAENRADIWKESCQVCLNVVGKPDALATWDGRLDLNEQDQIRNDCQRQAGKLP 92

Query: 427 NEEDDKLAVISDVESIITFYCKSKN 501
              DD   V  D+E IITFYCKS++
Sbjct: 93  LHGDDADEVAKDMEVIITFYCKSRS 117



 Score = 34.3 bits (75), Expect = 0.092
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 507 FTSNNGWIDIXXXXXXXXXXRSDTYNLFERILKLDTPKGCSKNGVPCHILRLI 665
           + +++G+ +I           SD YN F  +L    P+ C ++G P H+ RL+
Sbjct: 120 YRTSSGFTEILAPLMMLDLPVSDVYNCFYSLLYKFIPRDCVRDGKPFHLFRLL 172


>SB_25305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 507 FTSNNGWIDIXXXXXXXXXXRSDTYNLFERILKLDTPKGCSKNGVPCHILRLI 665
           + +++G+ +I           SD YN F  +L    P+ C ++G P H+ RL+
Sbjct: 32  YRTSSGFTEILAPLMMLDLPVSDVYNCFYSLLYKFIPRDCVRDGKPFHLFRLL 84



 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 418 KLGNEEDDKLAVISDVESIITFYCKSKN 501
           KL    DD   V  D+E IITFYCKS++
Sbjct: 2   KLPLHGDDADEVAKDMEVIITFYCKSRS 29


>SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)
          Length = 181

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 29/41 (70%)
 Frame = +1

Query: 346 LLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVE 468
           +L D+   LP+++++ DD+ +  EK+ +++DD L V S+++
Sbjct: 54  ILKDKENALPDKDDILDDILQHKEKVLSDKDDNLKVQSELD 94


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 355  DEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKSKNTTSLQ 516
            D+  D+P +  L+D +KK  +   NE  D+ A IS  ES  T   KS+ + + +
Sbjct: 1744 DKTVDIPTKGSLKDQLKKEKDVRCNESYDQQAGISLSESGGTSAMKSEQSYAFE 1797


>SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 627 NSPLVYPILKSFQTNYKYLTVVASNLTKVIKYQSNHCL 514
           N+ ++  I+ + + N+  LT+   NLT +  Y  NH L
Sbjct: 104 NTAIIIIIITTTKDNHTLLTIYMDNLTLLTTYMDNHTL 141



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 612 YPILKSFQTNYKYLTVVASNLTKVIKYQSNHCLK 511
           Y +L ++  N   LT    NLT +  Y  NH L+
Sbjct: 309 YTLLTTYMDNLTLLTTYMDNLTLLTTYMDNHALR 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,506
Number of Sequences: 59808
Number of extensions: 347627
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)