Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060102.seq
         (679 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY278447-1|AAP37004.1|  152|Anopheles gambiae microsomal glutath...    27   0.54 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   2.2  
X87411-1|CAA60858.1|  599|Anopheles gambiae maltase-like protein...    24   5.1  
AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    23   6.7  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   6.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.9  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       23   8.9  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       23   8.9  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       23   8.9  

>AY278447-1|AAP37004.1|  152|Anopheles gambiae microsomal
           glutathione transferase GSTMIC2protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 150 KLVDNYNTMELQIVRKIHQNNFVNI 76
           KLV  Y+  +++ VR+ HQN+  NI
Sbjct: 56  KLVPKYDDPDVERVRRAHQNDLENI 80


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 370 LPNQNELRDDVKKFVEKLGNEE 435
           + +QN+L+DD+KK + K G  E
Sbjct: 410 ISHQNKLQDDLKKDIAKQGELE 431


>X87411-1|CAA60858.1|  599|Anopheles gambiae maltase-like protein
           Agm2 protein.
          Length = 599

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 663 STLIYGKVLHFLNSPLVYPILKSFQTNYKYLTVVAS 556
           +TLI+G     +    VY IL+SF  + +   V+A+
Sbjct: 482 NTLIWGSFKSLVLGENVYAILRSFPNDKRTYVVLAN 517


>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 667 KINLNIWQGTPFFEQPFGV 611
           + NL  WQ  PF  +PFG+
Sbjct: 111 RFNLK-WQPMPFSSKPFGI 128


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 667 KINLNIWQGTPFFEQPFGV 611
           + NL  WQ  PF  +PFG+
Sbjct: 111 RFNLK-WQPMPFSSKPFGI 128


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +1

Query: 352 FDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKSKN 501
           FD+ F   + ++  DDV   +E    +  D+  +  ++    +  C S N
Sbjct: 322 FDDDFPFDDDSDFDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTN 371


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +1

Query: 352 FDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKSKN 501
           FD+ F   + ++  DDV   +E    +  D+  +  ++    +  C S N
Sbjct: 92  FDDDFPFDDDSDFDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTN 141


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +1

Query: 346 LLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKSKN 501
           L FD+  D  + ++  DDV   +E    +  D+  +  ++    +  C S N
Sbjct: 96  LPFDDDSDFDDDSDFDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTN 147


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +1

Query: 352 FDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKSKN 501
           FD+ F   + ++  DDV   +E    +  D+  +  ++    +  C S N
Sbjct: 92  FDDDFPFDDDSDFDDDVGDRLESEEEDSTDETLIEEELTDTDSSMCDSTN 141


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,981
Number of Sequences: 2352
Number of extensions: 13106
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)