Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060102.seq
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical pr...    39   0.004
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    33   0.25 
U29244-2|AAC71086.1|  334|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical...    28   7.0  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z79596-4|CAB01856.2|  554|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z79596-3|CAI79132.1|  561|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical
           protein F20D1.2 protein.
          Length = 641

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +1

Query: 304 WLLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITF 483
           W+  L      N L  +D++++L NQ  LR+D +K    L N+       + ++ES +T 
Sbjct: 43  WMRLLGVSMKPNPLDDWDQLYNLNNQCALRNDCRKLANGLKNKRS-----VPELESFLTL 97

Query: 484 YCKSK 498
           YCK +
Sbjct: 98  YCKKR 102


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +3

Query: 594  RILKLDTPKGCSKNGVPCHILRLIFN 671
            R+L+ D P+G +K  +PC++LRLI+N
Sbjct: 964  RLLRKDFPRGDAKIVLPCNLLRLIWN 989


>U29244-2|AAC71086.1|  334|Caenorhabditis elegans Hypothetical
           protein ZK1248.5 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 391 RDDVKKFVEKLGNEEDDKLAVISDVESII 477
           +DD+KKF E  GN+    L  + D + +I
Sbjct: 52  KDDIKKFKEAWGNDYHQTLTFLKDSDRLI 80


>AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical
           protein Y62H9A.10 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 657 LIYGKVLHFLNSPLVYPILKSFQTNYKYLTVV 562
           +++G +  FLN PL   +LK+   N K L V+
Sbjct: 26  VVFGAITLFLNIPLAIYLLKTTSKNQKELIVI 57


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 663 STLIYGKVLHFLNSPLVYPILKSFQTNYK-YLTVVASNLTKVIKYQSNHCLK*SCVLRFA 487
           S +I+G  + FL  P++Y I K+    +  Y  +V  ++  +I    +  +  S  ++ A
Sbjct: 39  SIMIFGVFIEFLYPPIIYLIFKTKLIRHSCYKIIVFLSIIDMIATVCSCFISGSLFIQGA 98

Query: 486 IKCDY 472
           + C Y
Sbjct: 99  VFCSY 103


>Z79596-4|CAB01856.2|  554|Caenorhabditis elegans Hypothetical
           protein C02C6.2b protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 143 TNLNLSCQTKQMAGD--DDDTWLIELESALLDG 235
           T +N+ C   ++     DD++W+ EL +  LDG
Sbjct: 388 TKVNIDCSVVELCSSSPDDNSWVQELAAPTLDG 420


>Z79596-3|CAI79132.1|  561|Caenorhabditis elegans Hypothetical
           protein C02C6.2a protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 143 TNLNLSCQTKQMAGD--DDDTWLIELESALLDG 235
           T +N+ C   ++     DD++W+ EL +  LDG
Sbjct: 395 TKVNIDCSVVELCSSSPDDNSWVQELAAPTLDG 427


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 639 LHFLNSPLVYPILKSFQTNYKYLTVVAS 556
           L+ + +P+V+P+   FQT+  Y  V A+
Sbjct: 55  LYVIGAPIVFPVAAVFQTSSVYFCVAAA 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,794
Number of Sequences: 27780
Number of extensions: 287963
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)