Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060102.seq
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   4.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 364  FDLPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKS 495
            F    +NE    +KK +EK  N +  +  V +  E  + F CK+
Sbjct: 1727 FHCMEKNEAAMKLKKRIEKGANPDLSQKPVSTTEELTVPFVCKA 1770


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 215 LVLSTKYHRRLLP 177
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 215 LVLSTKYHRRLLP 177
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 215 LVLSTKYHRRLLP 177
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 215 LVLSTKYHRRLLP 177
           L+LST+Y +RLLP
Sbjct: 68  LLLSTRYDKRLLP 80


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 661 NLNIWQGTPFFEQPFGVSNFKILSNKL*VSDRGSFKLNKGNKISIQPLFEV 509
           N+N W  TPF E+  G +N   +  K    D   F    GN +S +  F +
Sbjct: 68  NVNNWLWTPFIER--GPANRMYIEIKFTTRDCSLF---PGNALSCKETFSL 113


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 368 SNISSNKSNWFPAS*QFKHNNHTSGRKLTGIFFPFVNA*F 249
           S I+S+ +  FP      HNN  +   L+ +F+ FV   F
Sbjct: 7   SVIASDMAVLFPEKIIGLHNNMCTSLNLSNLFWLFVGTYF 46


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 141 DNYNTMELQIVRKIHQNNFVNIE 73
           +NYN       +K+++N  +NIE
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIE 125


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 141 DNYNTMELQIVRKIHQNNFVNIE 73
           +NYN       +K+++N  +NIE
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIE 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,223
Number of Sequences: 438
Number of extensions: 3551
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)