Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060100.seq
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    30   0.023
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +1

Query: 400 VDSVLDVVRKEAESCDCLQGFQL-THSLGGXHQFRYGPLLISKIREEYPDRIMNTYSVVP 576
           +DS+++++R   ++CD L G       + G +   + P +I  I +   D+I+  Y +  
Sbjct: 106 IDSIINIIRVRVDACDRLWGVDTGVDDILGNNTVIHQPRII--IIDLKTDKILRIYPLKS 163

Query: 577 SPKVSDTVVEPYNATLSVHQLVENTDETY 663
           S + SD+    +   L +     N D TY
Sbjct: 164 SDQTSDS----FFVDLVIDVDPNNCDNTY 188


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 129 LPELSSDLVAALTSLDMYDFPHFVLFM 49
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 69   PHFVLFM*TINYLTLKIXPH 10
            P   L   T N LT+K+ PH
Sbjct: 1370 PQITLTATTTNSLTMKVRPH 1389


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 246 GTYLPAGGFIVVY 208
           GT+L +GGF +VY
Sbjct: 70  GTFLGSGGFGIVY 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,480
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)