Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060099.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    24   1.0  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    24   1.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.3  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.4  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 71  LRVFVYYLPAQFTYILLDGGAFFVNFSNY-FRRFF 172
           +R+F YY+   FTY + +   F +  S    +RFF
Sbjct: 141 VRMFQYYIGRSFTYYVCNTTIFLIFHSVLPIKRFF 175


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 278 LSLYQRIKQSRWSRRY 325
           LS YQR+K   W  RY
Sbjct: 158 LSRYQRLKAQLWQNRY 173


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 322 VSEESVDSGVGRCSSQSGSERESDETPRGXEQXAPVDIPDSEDM 453
           + E + DSG GR   + G   +     +  E   P ++ + ED+
Sbjct: 84  LGENNDDSGGGRGGGRDGDRGDGGGEEKKREFYIPPEVENVEDL 127


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +3

Query: 165 VFFFLHLLTLYRFHVEK 215
           +F+++H   + RF++E+
Sbjct: 231 IFYYMHQQIIARFNIER 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,991
Number of Sequences: 336
Number of extensions: 2311
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)