Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060099.seq
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0125 - 18241542-18242129                                         29   4.5  
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    29   4.5  
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    29   4.5  
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580...    28   7.9  
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792...    28   7.9  

>05_04_0125 - 18241542-18242129
          Length = 195

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 402 KGXRAVRAGRHPRQRG-HAATQGRGAQEASQEEAFWNSV 515
           +G  A + GR  RQR   AAT+G GA+   +EE  WN +
Sbjct: 138 EGGGAQQPGR--RQRSVDAATRGSGARAVLEEEKTWNLI 174


>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 234 KAAFEE*TPTRFKYHYRCINVSSNQDGQEGIGRECR*RCG 353
           +A  E+     FK  YRC N SS  D   G G  CR + G
Sbjct: 296 RATCEQARNNSFKTQYRCNNESSCMDRFMGEGYVCRCKAG 335


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 313 VKKVSEESVDSGVGRCSSQSGSERESDETPRGXEQXAPVDIPDS 444
           V+ VSEE  + GV   S +SG+  E D+     E+  P  +  S
Sbjct: 56  VESVSEEGEEEGVEEDSEESGAAGEDDDGEDNDEKPRPEPVAAS 99


>05_05_0229 -
           23457438-23457629,23457706-23457828,23457913-23458026,
           23462062-23462597,23463258-23464545
          Length = 750

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 399 SKGXRAVRAGRHPRQRGHAATQGRGAQEASQEEA-FWNSVVTSC-FQDLYKLTGEVLGEG 572
           SKG +A   GR  + +   ++ G   QEA + +  F+N    +   +DL + + EVLG+G
Sbjct: 296 SKG-KAAAGGRAEKSKQEYSSSG--IQEAERNKLIFFNGCSYNFDLEDLLRASAEVLGKG 352

Query: 573 AYAS 584
           +Y +
Sbjct: 353 SYGT 356


>01_06_1094 -
           34478538-34478624,34478860-34478931,34479154-34479222,
           34479312-34479422,34480390-34480528,34480590-34480705,
           34480821-34480968,34481058-34481215,34481654-34481827,
           34482592-34483056
          Length = 512

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +2

Query: 71  LRVFVYYLPAQFTYILL 121
           LRV+VY +P++FTY LL
Sbjct: 113 LRVYVYEMPSRFTYDLL 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,305
Number of Sequences: 37544
Number of extensions: 290494
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)