Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060099.seq
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.       28   7.1  
AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical...    28   7.1  
Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical
           protein R166.5b protein.
          Length = 707

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +3

Query: 528 FQDLYKLTGEVLGEGAYASV 587
           F D YKLT E LG GAY SV
Sbjct: 198 FFDYYKLTDEHLGSGAYGSV 217


>Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical
           protein R166.5a protein.
          Length = 705

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +3

Query: 528 FQDLYKLTGEVLGEGAYASV 587
           F D YKLT E LG GAY SV
Sbjct: 196 FFDYYKLTDEHLGSGAYGSV 215


>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical protein
            C09G5.8 protein.
          Length = 1531

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 340  DSGVGRCS-SQSGSERESDETPRGXEQXAPVDIPDSE 447
            D+ V  CS S S SE  S  +PR  E+ APV +PD E
Sbjct: 1327 DTNVITCSKSNSTSESSSTSSPRRAEK-APVPLPDYE 1362


>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical protein
            C09G5.8 protein.
          Length = 1531

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 340  DSGVGRCS-SQSGSERESDETPRGXEQXAPVDIPDSE 447
            D+ V  CS S S SE  S  +PR  E+ APV +PD E
Sbjct: 1327 DTNVITCSKSNSTSESSSTSSPRRAEK-APVPLPDYE 1362


>Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical
           protein T04A8.12 protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 3   ARXIGGRV*DGSLTIPAVFYSVF*EXLFITFRHNLRTSFSTVVLFSLI--SRIIFGVFFF 176
           A  +G R  +  +   A+F   F    ++ +RHN         LF+L+  S ++  +FF 
Sbjct: 185 ATNLGQRSHEYKILGAAIFVLCFFLGAYLYWRHNTYCEPGIYTLFALVEYSAVLSNIFF- 243

Query: 177 LHLLTLYRFHVEKATATS 230
            H    Y FH +    TS
Sbjct: 244 -HCTLYYDFHGKNIVLTS 260


>Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical
           protein F58A3.2c protein.
          Length = 1158

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 FSTVVLFSLISRIIFGVFFFLHLLTLYR 200
           F+T++LF L++  +FG+ F +   TL++
Sbjct: 528 FTTILLFLLLAATLFGILFMVCKQTLHK 555


>Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical
           protein F58A3.2e protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 FSTVVLFSLISRIIFGVFFFLHLLTLYR 200
           F+T++LF L++  +FG+ F +   TL++
Sbjct: 528 FTTILLFLLLAATLFGILFMVCKQTLHK 555


>Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical
           protein F58A3.2d protein.
          Length = 1096

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 FSTVVLFSLISRIIFGVFFFLHLLTLYR 200
           F+T++LF L++  +FG+ F +   TL++
Sbjct: 528 FTTILLFLLLAATLFGILFMVCKQTLHK 555


>Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical
           protein F58A3.2b protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 FSTVVLFSLISRIIFGVFFFLHLLTLYR 200
           F+T++LF L++  +FG+ F +   TL++
Sbjct: 476 FTTILLFLLLAATLFGILFMVCKQTLHK 503


>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical
           protein F58A3.2a protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 FSTVVLFSLISRIIFGVFFFLHLLTLYR 200
           F+T++LF L++  +FG+ F +   TL++
Sbjct: 528 FTTILLFLLLAATLFGILFMVCKQTLHK 555


>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 117 FSTVVLFSLISRIIFGVFFFLHLLTLYR 200
           F+T++LF L++  +FG+ F +   TL++
Sbjct: 528 FTTILLFLLLAATLFGILFMVCKQTLHK 555


>AC006808-4|AAF60815.3|  397|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4a protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 259 LLVLNIIIAVSTYQAIKMVKKVSEESVDSGVGRCSSQSGSERESDETPR 405
           LL   + +AV TY   K+++KVS++ +      C S +  +R SD T R
Sbjct: 233 LLQFVVPMAVITYCYFKILQKVSKDMIIQNAQFCQSLTQKQR-SDATSR 280


>AC006808-3|AAT68889.1|  433|Caenorhabditis elegans Hypothetical
           protein Y58G8A.4b protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 259 LLVLNIIIAVSTYQAIKMVKKVSEESVDSGVGRCSSQSGSERESDETPR 405
           LL   + +AV TY   K+++KVS++ +      C S +  +R SD T R
Sbjct: 233 LLQFVVPMAVITYCYFKILQKVSKDMIIQNAQFCQSLTQKQR-SDATSR 280


>AC006695-17|AAF39983.2|  327|Caenorhabditis elegans Hypothetical
           protein W06H8.6 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 325 SEESVDSGVGRCSSQSGSERESDETPR 405
           S ESV+S    CSS+S +ERE++   R
Sbjct: 71  SAESVNSIKSSCSSRSSAERETERAQR 97


>Z93393-9|CAB07695.1|  190|Caenorhabditis elegans Hypothetical
           protein Y48E1B.11 protein.
          Length = 190

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 92  LPAQFTYILLDGGAFFVNFSNYFRRF--FFPSSFNAVPISRREGDRH 226
           +P  F Y+  D  +   NF++ FR+     P  FN + I     D H
Sbjct: 6   VPCIFKYLSFDKKSHLANFNSIFRKLEKKLPYHFNCIKIDTTREDWH 52


>Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical
           protein F10G8.2 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 447 GHAATQGRGAQEASQEEAFWNSVVTSCFQDLYKLTGEVLGEGAYASV 587
           G+AA     A E  ++    + +VT   +  YKL G VLGEG Y +V
Sbjct: 24  GNAAAVAPMAHEKDRQSKEGDEIVTKSGKK-YKL-GPVLGEGGYGTV 68


>Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical
           protein C27D8.2 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 301 AIKMVKKVSEESVDSGVGRCSSQSGSERESDE 396
           AIK+ K  SE+++ S   + +S+SGS  +  E
Sbjct: 462 AIKLSKSQSEQNISSSKSKSASRSGSRSKRSE 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,350,928
Number of Sequences: 27780
Number of extensions: 238244
Number of successful extensions: 773
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)