Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060098.seq
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    29   0.46 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.46 
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    27   1.9  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   2.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   7.6  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   10.0 
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   10.0 

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 253 DARRSSLLATPHSSYLLSLCNGPT*LSARPAVTRSFTRACATGPST 390
           + R++SLL + HSSY   L   PT LS   ++ R +       PST
Sbjct: 488 NTRKTSLLGSNHSSYSDKL-GSPTILSTSFSLARPYPEPALVSPST 532


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 493 PPFRSSVHLHLRRDQALLPAPQPRRLARTRD 585
           P FR++VHLH+  DQA++   +P  L + ++
Sbjct: 519 PLFRANVHLHMTYDQAIIIMSRPVLLHKMKN 549


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 511 QMNGMAGSHHTNLSGYILKPLSIPGVYER-NAASAVSNMRPKLRAQLRMPW*MIELRRVL 335
           Q+ G+ GS+ ++L    +K   +  V +  N  S V   RP+    +  PW   E +++L
Sbjct: 35  QLYGLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYISSPWLTREDKKIL 94


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 416 GGVPLVHSRYGQGLEDVPTQVRVVAARHSVHLS----IFIYDEIRRFYLR 553
           G VP+ +S  G  L  VPT   V+ A ++  LS    + ++D  R+FY R
Sbjct: 96  GSVPIDYSVSGNPLSFVPTWTPVIEAANADALSSSGRVELFDMGRQFYER 145


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 205 AINDLTDSYGQEWTYRDARRSSLLATPHSSYLLSLCNGP 321
           A+ DL  S  +EW Y      SLL + H   + S+C  P
Sbjct: 102 ALMDLIVSAEKEWHYGSPLSESLLCSAH---VFSICKSP 137


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 7   RSDIMKRQPRNPFTDKLVNERLISMAYG 90
           R +I+K    N FTD+L+N  + S++ G
Sbjct: 525 RDEIVKALKENSFTDELINMPIGSLSGG 552


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 410 RAGGVPLVHSRYGQGLEDVPTQVRVVAARHSVH 508
           + GG   ++   GQ  +D  + VR  A+  +VH
Sbjct: 20  KQGGASRINQILGQNSDDSQSDVRATASEEAVH 52


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 520 HLRRDQALLPAPQPRRLA 573
           HLRR++ALLP  +P + A
Sbjct: 462 HLRREEALLPNAKPVKTA 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,126
Number of Sequences: 5004
Number of extensions: 59595
Number of successful extensions: 215
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)