Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060098.seq
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 31 0.84
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470... 30 1.9
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 29 2.6
02_05_0237 + 27095817-27097433 29 4.5
01_01_0285 - 2360799-2362631 29 4.5
02_04_0274 - 21455942-21456325,21456453-21456521,21456622-214566... 28 5.9
01_01_1006 - 7972645-7973811 28 5.9
08_02_1352 - 26325081-26325150,26325315-26325391,26326799-263269... 28 7.8
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 28 7.8
01_05_0082 - 17972276-17973268 28 7.8
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 535 DLVVDEDGQMNGMAGSHHTNLSGYILKPLSIPGVYERNAASA 410
D+V+DEDGQ G S + I+K L +P A+A
Sbjct: 388 DIVLDEDGQQTGFLASEKEEYAEAIVKVLRMPEAERHEMATA 429
>03_01_0643 -
4708245-4708355,4708456-4708800,4709124-4709700,
4709780-4710462,4710618-4710980,4712199-4712530,
4712856-4713048,4713748-4713790,4713964-4714052,
4714186-4714301,4714816-4714935,4715538-4715577
Length = 1003
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 153 VFSHDHEVDEEASRGLDHSD-LSVSHRDQPL 64
++ +DH+ + +SR H D L SH D PL
Sbjct: 144 IYGYDHQAGKLSSRSTGHDDVLQASHADSPL 174
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 441 GMDKGLRMYPLKFVWWLPAIPFICPSSSTTRSGAST 548
G+ G +Y F LPA+ I P++ T RSG+ST
Sbjct: 125 GILAGPYLYNESFADALPAVESIAPANHTVRSGSST 160
>02_05_0237 + 27095817-27097433
Length = 538
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 258 KALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQ 365
KA E + A+FVS V ++C+ RN + HQ
Sbjct: 501 KAFETAYNNAWFVSFFVAGAVYCLLCRRNRNELKHQ 536
>01_01_0285 - 2360799-2362631
Length = 610
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 156 SVFSHDHEVDEEASRGLD---HSDLSVSHRDQPLVNEFISERVTRLSL 22
++ +H H VD SRG + H L R +PL+ E E VTR L
Sbjct: 545 ALLTHAHVVDPLQSRGGNSGLHMQLEEEERRRPLIEEQEMELVTRRKL 592
>02_04_0274 -
21455942-21456325,21456453-21456521,21456622-21456687,
21456796-21456861,21456982-21457149,21457262-21457351,
21457578-21457622,21458112-21458747
Length = 507
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 501 PFICPSSSTTRSGASTCAATPAAG 572
P IC SSS SG+ AA PA G
Sbjct: 114 PVICSSSSNDSSGSEHSAAMPAGG 137
>01_01_1006 - 7972645-7973811
Length = 388
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 354 IIHQGMRNWA-LNFGLIFETALAAFLSYTPGMDKGLRMYPL 473
++HQ M W L++GL+ + A PG+ LR PL
Sbjct: 204 VVHQMMIWWVDLSYGLLADLAFDQLRRVVPGIHHDLRFIPL 244
>08_02_1352 -
26325081-26325150,26325315-26325391,26326799-26326956,
26327433-26327518,26327635-26328317
Length = 357
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 419 GVPLVHSRYGQGLEDVPTQVRVVAARHSVHLSIFIYDEIRRFYLRRNPGG 568
GVPL+ + YG+ +D+ Q+ VV + L + + E+R+ ++ GG
Sbjct: 110 GVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAF-ELRKAWVVGGGGG 158
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 247 YRDARRSSLLATPHSSYLLSLCNGPT*LSAR 339
Y D + S T H +LLSL +GPT + AR
Sbjct: 374 YTDCNKHSGQTTLHCEHLLSLESGPTIVKAR 404
>01_05_0082 - 17972276-17973268
Length = 330
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 162 EESVFSHDHEVDEEASRGLDHSDLSVSHRDQP 67
EES SHDH+ D+ G D++D++++ P
Sbjct: 219 EESAGSHDHDDDDHVDDG-DNNDMAIADVTPP 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,048,339
Number of Sequences: 37544
Number of extensions: 450757
Number of successful extensions: 1452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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