Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060098.seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    28   0.071
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 0.071
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 607 DRRCLIISLLFEPAAGVAAQVEAPDLVV 524
           DR CLII  LF   A +A  + AP ++V
Sbjct: 527 DRMCLIIFTLFTIIATIAVLLSAPHIIV 554


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 KQWDSKAINDLTDSYGQEWTY 249
           K W +  I DLT S  ++ TY
Sbjct: 91  KPWSTLPIEDLTKSDNEDITY 111


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 KQWDSKAINDLTDSYGQEWTY 249
           K W +  I DLT S  ++ TY
Sbjct: 129 KPWSTLPIEDLTKSDNEDITY 149


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 356 HSPGHAQLG 382
           H PGHAQ+G
Sbjct: 213 HLPGHAQMG 221


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -2

Query: 204 LRVPLLPDTEKLHREESVFSHDHEVDEEASRGLDHSDLSVSHRDQPLVNEFISERVTRLS 25
           L+ P   D  K  R  +     HE D E SRG  + D      ++ L N+ I   +T + 
Sbjct: 746 LKSPEWKDLAKKARSVNHLLTHHEYDYELSRG--YID------EKILENQNI---ITHMI 794

Query: 24  LHYVGS 7
           L+YVGS
Sbjct: 795 LNYVGS 800


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 265 SSLLATPHSSYLLSLCNGP 321
           +SLL++ HS+   SL  GP
Sbjct: 696 ASLLSSTHSTLARSLMEGP 714


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,637
Number of Sequences: 438
Number of extensions: 4372
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)