Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060097.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 46 7e-06
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 31 0.16
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 30 0.27
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.47
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 28 1.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 27 3.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 4.4
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 5.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 5.8
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 7.7
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 7.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 7.7
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 7.7
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.7
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.7
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 25 7.7
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 7.7
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 246 QRGLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARH 425
+R L+A L V+G G + +D+D A ++G+ V N+P AN+ S EL ++ LAR
Sbjct: 111 RRVLEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQ 170
Query: 426 V 428
V
Sbjct: 171 V 171
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 484 KCTEPGPTCQLSAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAE--STSM 311
KC+ P+CQ + K W R N+ + S A L+P I P+L + S ++
Sbjct: 33 KCSGEKPSCQACSNNKVECIWPDRPNMRGKKPSSAARTLSPLTGIV-QPYLGSHPFSPTI 91
Query: 310 LSTPAPARPTTFS 272
LS +P T+S
Sbjct: 92 LSPSSPNMDFTYS 104
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 270 KLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLAR 422
KL V G AG +N+DVD A + GV V N P + L + R
Sbjct: 85 KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLR 133
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.47
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -3
Query: 502 PASFAAKCTEPGPTCQLSAQWKAGTTWRARTNINVQVSSHALSALAPGALITP-TPFLPA 326
P S ++ T P P S GT+ + + ++ + S G TP TP +P
Sbjct: 307 PTSTSSTSTPPPPASTSST----GTSSSPLPSTSTSCTT-STSIPPTGNSTTPVTPTVPP 361
Query: 325 ESTSMLSTPAPARPTTFSFTPASKPLWS 242
STS STP P T+ + T +S PL S
Sbjct: 362 TSTSSTSTPPPPASTSSTGT-SSSPLLS 388
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 361 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASKPL 248
G TP TP +P STS STP P T+ + T +S PL
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT-SSSPL 332
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 358 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPA-SKPL 248
+L TP TP +P STS S P P PT+ S T S PL
Sbjct: 129 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSNPL 165
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 358 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPA-SKPL 248
+L TP TP +P STS S P P PT+ S T S PL
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSSPL 222
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 358 ALITP-TPFLPAESTSMLSTPAPARPTTFSFTPA-SKPL 248
+L TP TP +P STS S P P PT+ S T S PL
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIP--PTSTSSTDTNSSPL 278
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 96 IVDGVGAKCAELLNALRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSS 242
I D KC EL+N R G+D + R + + G AF+N+S
Sbjct: 254 ITDACAVKCIELVNKYLKRAVDNGKDEEARDNMAYAE-FLGGMAFNNAS 301
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 415 RTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASKP 251
++N N SS +A A L P P ++++S S PA + +P KP
Sbjct: 168 QSNANYTASSPLPTASANAPLPVPPPRRVSQNSSYASGSVPAATAASTASPVKKP 222
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 457 QLSAQWKAGTTW 422
+L+AQWKA TTW
Sbjct: 43 KLTAQWKANTTW 54
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -3
Query: 412 TNINVQVSSHALSALAPGALITPTPFLPAES-TSMLSTPAPARPTTFSFTPASKPLW 245
T+IN V+S +L++ + G T L A S S+ S P++P T F +W
Sbjct: 275 TSINANVTS-SLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNIW 330
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 273 LKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLML 410
+K + GAG + +DV + +G+ V + P A + ++ LML
Sbjct: 81 VKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLML 126
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 111 GAKCAELLNALRNRHHHQGQDL 176
G+K ++L LRN+ HH QDL
Sbjct: 1002 GSKILDILRVLRNKRHHY-QDL 1022
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 382 ALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTP 263
++SAL+ + + PT + S S PAP P + S +P
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 394 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 278
+ S A+S P ++ P PA T M + P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 430 TTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 299
T +R ++N+ S +A S A ++ +PA STS S P
Sbjct: 524 TPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 231 SNSSDQRGLDAGVKLKVVGRAGAGVDNIDVDSAGKKG 341
S+ +R D+GV L+ GAG+D D+ A + G
Sbjct: 402 SDPESRRRFDSGVDLEPGMEGGAGMDPFDILRAYQAG 438
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.7
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 355 LITPTPFLPAESTSMLSTPAPARPTTFSFTPASKPLWSLELLNAQPERRGWVSP 194
L P+P A S++S P+P R T + P K L S E N + + SP
Sbjct: 229 LYMPSPPSSALPVSLVSAPSPPRATNVA-VPCLKHLESSEQGNNLLINKAFTSP 281
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 7.7
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 472 PGPTCQLSAQWKAGTTWRARTNINVQVSSHALS-ALAPGALI-TPTPFLPAESTSMLSTP 299
PGP SA + ++ A ++ SHA A P A + + PA +T +S P
Sbjct: 251 PGPISVPSAPYGRASSTIAE--VSPMYGSHAAPYASTPSAAVGSSRGSTPASATVPIS-P 307
Query: 298 APARPTTFSFTPA 260
A PTT ++ PA
Sbjct: 308 ARGFPTTSAYNPA 320
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 480 VQSRVQPASFQRSGKLGPRGEPE 412
V + ASF RSG LGP E E
Sbjct: 375 VSEKTIQASFLRSGLLGPHSEAE 397
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 391 SSHALSALAPGALITPTPFLPAESTSMLSTPAP 293
S H + P L P+ F+ A+ S L TP P
Sbjct: 152 SDHPIDLDNPEHLTPPSSFITAKQLSRLPTPLP 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,401
Number of Sequences: 5004
Number of extensions: 46380
Number of successful extensions: 177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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