Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060097.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 48 7e-06
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 39 0.003
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 32 0.38
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 31 0.66
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 31 0.87
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1) 29 2.7
SB_38885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 29 3.5
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_46784| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4.5) 29 4.6
SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68) 28 6.1
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 6.1
SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2) 28 6.1
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 28 6.1
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_50707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_50132| Best HMM Match : Hydrophobin (HMM E-Value=6.1) 28 8.1
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 8.1
SB_42529| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-23) 28 8.1
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +3
Query: 255 LDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVV 431
LD LKV+ GAG D ID+ +A K+G+ V N PG ++ L+L ARH+V
Sbjct: 63 LDDLPSLKVISSIGAGFDRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLASARHIV 121
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/55 (40%), Positives = 36/55 (65%)
Frame = +3
Query: 273 LKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPA 437
LKV+ GAG+DNID+++A ++G+ V N PG + A + L++ AR+V+ A
Sbjct: 73 LKVISNIGAGIDNIDLEAAKRRGILVGNTPGISDCLA-DFAWALLMAAARNVIQA 126
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +3
Query: 243 DQRGLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLAR 422
D +D +L+V+ AG GVD+ID+ +A +G+ V N PG + L+L AR
Sbjct: 60 DSALMDCYPELRVISSAGVGVDHIDLAAATIRGIRVGNTPGVVQECTADHAIGLLLASAR 119
Query: 423 HV 428
+
Sbjct: 120 KI 121
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 255 LDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVI 353
+ AG LK++GRAG GVDNID +A GV V+
Sbjct: 93 IKAGKNLKIIGRAGTGVDNIDTVAASLHGVLVM 125
Score = 25.8 bits (54), Expect(2) = 0.77
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 145 GIATTTKAKISKEELLMEIP 204
G+ K+SKEEL+ EIP
Sbjct: 27 GVTVDVNTKLSKEELVSEIP 46
Score = 24.2 bits (50), Expect(2) = 0.77
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = +1
Query: 208 HDALVVRSATQVTKEV 255
+D L+VRSAT+V+++V
Sbjct: 77 YDGLIVRSATKVSEDV 92
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 391 SSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 278
SS +++ +L TP+ P+ ST LSTP P++P+T
Sbjct: 196 SSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPST 233
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 117 KCAELLNALRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSSDQRG 254
+C + N R HHH G + S G+ R+ +NSS RG
Sbjct: 366 RCNSVGNIARGGHHHHGNMQRRHPSVGNVSSNRNADHVANSSAPRG 411
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.1 bits (67), Expect = 0.87
Identities = 23/76 (30%), Positives = 30/76 (39%)
Frame = -3
Query: 478 TEPGPTCQLSAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 299
T+P PT + + TT + + S AP TPTP P +T TP
Sbjct: 27 TKPTPTTHTPTK-PSPTTPTSTAPTQTTPTPTTPSPTAP-TQTTPTPATPTPTTPTPKTP 84
Query: 298 APARPTTFSFTPASKP 251
P T TPA+ P
Sbjct: 85 TPTTSTLTKPTPATTP 100
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 349 TPTPFLPAESTSMLSTPAPARPTTFSFTPASKPL 248
TP+P P ++T +TP P PT + TP + L
Sbjct: 58 TPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTL 91
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 349 TPTPFLPAESTSMLSTPAPA-RPTTFSFTPAS 257
TPTP P +TS L+ P PA PT TP +
Sbjct: 78 TPTPKTPTPTTSTLTKPTPATTPTPTKPTPTA 109
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 388 SHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASKP 251
+H + P + TP F+P + + P P R T P KP
Sbjct: 104 AHNMGVAGPSGMATPGTFIPPPPPGVFTPPPPYRTTAKPKGPTKKP 149
>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
Length = 186
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +3
Query: 90 VLIVDGVGAKCAELLNALRN---RHHHQGQDLQGRTSYGDTQPR 212
+ I + A C L + R RHHH L G +SYG P+
Sbjct: 100 IAITKIISAPCMLLCRSKRPYGLRHHHHASGLMGASSYGMAMPK 143
>SB_38885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 452 KLAGWTRLCTLXSEARWARPSPSLAFGKVGRE 547
+LA R+ L S A WA+ SPSL+ +GR+
Sbjct: 46 RLAKEVRVFLLLSVADWAKTSPSLSINVLGRD 77
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 333 KKGVGVINA-PGANALSACELTCTLMLVLARHVVPAFHCAESWQVGPGSVHXAAKLAGQD 509
K G V NA PG +A++ C+ T L + ++ F ++ WQ G V L +
Sbjct: 461 KLGENVCNALPGYHAITGCDSTSGLFRIGKKNAWRVFLKSQEWQEAIGDVGCEVPLPQET 520
Query: 510 PR 515
R
Sbjct: 521 ER 522
>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1750
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = -3
Query: 514 RGSCPASFAAKCTEPGPTCQLSAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPF 335
R C A+ A+C G TC + A W A T + + + +S S P+P
Sbjct: 1308 RPQCSATHYARCLSYG-TCTVGANWAAVTKQKRKKKKRITFASDLTSPTRSSPRPPPSPS 1366
Query: 334 LPA 326
+ A
Sbjct: 1367 VTA 1369
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 469 GPTCQLSAQWKA-GTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAP 293
G +C A KA G + T + HA A AP + P P PA STS + TP+P
Sbjct: 275 GLSCASMAAIKAAGLSGCITTMAHTSPFLHAPIARAP--IARPLPTSPACSTSRIYTPSP 332
Query: 292 ARP 284
P
Sbjct: 333 LPP 335
>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +1
Query: 106 GLAPSVPNSSTLYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKEVWTQA*S*RWS 285
G + NS TL A + LL+ + DALV + +W W+
Sbjct: 20 GFPVLILNSMTLLTFALNQNLRKPSTYLLISVSAADALVGLFSMAYGITLWAGHNKGWWN 79
Query: 286 VVLELVWTTS 315
L LVWT++
Sbjct: 80 TALNLVWTSA 89
>SB_46784| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4.5)
Length = 192
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 325 ESTSMLSTPAPARPTTFSFTPASKPLWSLELLNAQPERR 209
++ S+L+ ARP+TFS + + +P + LN P +R
Sbjct: 10 KAPSLLTQSMLARPSTFSTSTSEQPAFQRACLNPPPYKR 48
>SB_25007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 325 ESTSMLSTPAPARPTTFSFTPASKPLWSLELLNAQPERR 209
++ S+L+ ARP+TFS + + +P + LN P +R
Sbjct: 10 KAPSLLTQSMLARPSTFSTSTSEQPAFQRACLNPPPYKR 48
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -3
Query: 478 TEPGPTCQLSAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 299
+ PG T + + TT + + +++ + S +APG + P E+T T
Sbjct: 1863 SRPGTTLAPKSTVASVTTMAPESTLAPEITIASESTVAPGTTMAPETTFTPETTKAPETT 1922
Query: 298 APARPTTFS-FTPASKPLWSLELLNA 224
P T S TPA + + E + A
Sbjct: 1923 LPPETTMASESTPAPESTLAPETIIA 1948
>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 517 WRGSCPASFAAKCTEPGPTCQLSAQWKAG-TTWRARTNINVQV 392
+R PA F CTEP P+ + S G TT + NI V+V
Sbjct: 1124 FRLEIPAPFRLVCTEPPPSAKSSRPVPGGLTTVKPGKNIEVKV 1166
>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
Length = 1113
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 394 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF-SFTPASKP 251
V++ ++ A P ITP P S S LST A+ S T ASKP
Sbjct: 354 VTATSICASTPVTQITPAPSKSLASVSTLSTVGSAKINNHSSSTSASKP 402
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 412 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFS--FTP 263
T ++V + + + + G L+TP P+LPA ++ T P+T+ +TP
Sbjct: 492 TCVDVNAALGLVVSGSQGKLLTPFPYLPAAEYTLPLTSRLIHPSTYKPLYTP 543
>SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)
Length = 332
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 126 ELLNALRNRHHHQGQDLQGRTSYGDTQPRRSGCAFSNSSD 245
++ AL ++ H +GQ RTS+ + Q R +S D
Sbjct: 176 QVKTALHDKSHREGQTALHRTSHSEVQNARHRTCYSKDQD 215
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 321 DSAGKKGVGVINAPGANALSACELTCTLML 410
D G+ GV V +APG C++ CT L
Sbjct: 235 DEMGRAGVTVEHAPGDADYKICQMACTYAL 264
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 394 VSSHALSALAPGALITPTPFLPAESTSML 308
+S H L LA G PTP +PA + S+L
Sbjct: 163 LSPHELRLLAKGLKFIPTPPIPASNKSLL 191
>SB_50707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -3
Query: 517 WRGSCPASFAAKCTEPGPTCQ---LSAQWKAGTTWRARTNINVQVSSHALSAL-APGALI 350
W GS P AA C +P + + Q G T R +VS A S + G+
Sbjct: 46 WSGSQPRCIAAACPDPVAPAKGLVVGLQRSVGDTVRFECQEGYRVSGKAYSVCQSSGSWD 105
Query: 349 TPTP 338
+PTP
Sbjct: 106 SPTP 109
>SB_50132| Best HMM Match : Hydrophobin (HMM E-Value=6.1)
Length = 114
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = -3
Query: 391 SSHALSALAPG---ALITPTPFLP-AESTSMLSTPAPARPTT 278
S +A +A+A G A +TP+ P A STS + + A ARPTT
Sbjct: 22 SINATTAIATGTFSATVTPSKTSPVAMSTSAVFSTAAARPTT 63
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 29 SIKLNNDSTTKPRWSWDIKXGFDRRRGWRQVCR 127
SIK+ T P+ D+ FD R+ W+Q R
Sbjct: 1474 SIKMETRDTVVPKVVDDVTRAFDERKTWQQSLR 1506
>SB_42529| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-23)
Length = 299
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 418 LATWSQLSTALKAGRLDPALYTXQRSSLGKTLAILGLWQGR--PRSXPLGCNAFXMNIIG 591
LA S + AL + LDP +Y+ + + AIL +W+GR +S +GC++ + +
Sbjct: 239 LADISFFTIALSS-LLDPLVYSFLKPDFRR--AILAIWRGRSEQQSERVGCHSEVVTMTP 295
Query: 592 IRTL 603
+R L
Sbjct: 296 LRRL 299
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,134,022
Number of Sequences: 59808
Number of extensions: 402705
Number of successful extensions: 1493
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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