Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060097.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    73   3e-13
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    32   0.44 
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    32   0.44 
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    29   3.1  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    29   3.1  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
 Frame = +3

Query: 81  LSXVLIVDGVGAKCAELLNALRNRHHHQGQDLQGRTSYGDTQPRRSGC----AFSNSSDQ 248
           ++ VLI D +  +C ++L   +N      +  Q +     T P+        A   +++ 
Sbjct: 5   INKVLIADDIEQECVDILK--QNGIEVTVKTKQTKDELLVTLPQHDAVIVRSATKITAEL 62

Query: 249 RGLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHV 428
               AG KLK+VGRAG GVDNIDV +A    + V+N P AN+ SA ELTCTL+L L+RHV
Sbjct: 63  LAASAG-KLKLVGRAGTGVDNIDVPAASANKILVMNTPQANSRSAAELTCTLILSLSRHV 121

Query: 429 VPA 437
             A
Sbjct: 122 PQA 124


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/50 (46%), Positives = 31/50 (62%)
 Frame = +3

Query: 273 LKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLAR 422
           LKVV R G G+DNIDV +A + G+ V +APG       + T +L+L L R
Sbjct: 243 LKVVFRIGYGIDNIDVKAATELGIAVCHAPGDYVEDVADSTLSLILDLFR 292


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 415 RTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTP 263
           R+N ++  SS  +    P A   P P +PA + +  STP PA P   + +P
Sbjct: 150 RSN-SISHSSDVIRPSQPKATAPPPPLVPAPARATASTPPPAPPAARAQSP 199


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 415 RTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTP 263
           R+N ++  SS  +    P A   P P +PA + +  STP PA P   + +P
Sbjct: 510 RSN-SISHSSDVIRPSQPKATAPPPPLVPAPARATASTPPPAPPAARAQSP 559


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 349 TPTPFLPAEST-SMLSTPAPARPTTFSFTPASK 254
           TP P  P+ +T S + TPAP  PT  + TP  K
Sbjct: 55  TPAPKTPSRTTKSTVDTPAPKTPTRAAKTPVVK 87


>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical protein
            DY3.7 protein.
          Length = 922

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -3

Query: 490  AAKCTEPGPTCQL---SAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAES 320
            AA    PGP  Q    +A   + TT  AR +    V+     A+ PG +  P P +    
Sbjct: 805  AAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVPPGVVGPPIPLIATHP 864

Query: 319  TSMLSTPA 296
             S  STPA
Sbjct: 865  GSSSSTPA 872


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 346 PTPFLPAESTSMLSTPAPARPTTFSFTPA 260
           PT  LP  +T+  +TP P   TT + TPA
Sbjct: 414 PTTPLPTTTTTTTTTPKPTTTTTTTTTPA 442


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -3

Query: 490  AAKCTEPGPTCQL---SAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAES 320
            AA    PGP  Q    +A   + TT  AR +    V+     A+ PG +  P P +    
Sbjct: 805  AAGSVPPGPGAQPRSGAASAPSRTTPSARPSAPPLVAPQVAVAVPPGVVGPPIPLIATHP 864

Query: 319  TSMLSTPA 296
             S  STPA
Sbjct: 865  GSSSSTPA 872


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = -3

Query: 493 FAAKCTEPGPTCQLSA--QWKAGTTWRARTNINVQVSSHALSALAPGALITP-TPFLP-A 326
           F A   EP  T    A     A T+  A TN+     +   S   P    +P T   P +
Sbjct: 220 FRADLNEPTTTSTAYAAPSSTASTSTPAPTNLPTTTGAPTNSTTNPPTATSPKTSSQPVS 279

Query: 325 ESTSMLSTPAPARPTTFS 272
            STS  S+PAP  P T S
Sbjct: 280 SSTSSTSSPAPTNPPTTS 297


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 391 SSHALSALAPGALITPTPFLPAESTSMLSTP-APARPTTFSFTPASKPL 248
           S+   S  AP  L TPT   P   TS  + P AP  PT+ +  P   P+
Sbjct: 634 STVGTSPTAPANLTTPTT-APVNPTSSTTAPTAPVNPTSPTTAPTVPPV 681


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 391 SSHALSALAPGALITPTPFLPAESTSMLSTP-APARPTTFSFTPASKPL 248
           S+   S  AP  L TPT   P   TS  + P AP  PT+ +  P   P+
Sbjct: 690 STVGTSPTAPANLTTPTT-APVNPTSSTTAPTAPVNPTSPTTAPTVPPV 737


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 394 VSSHALSALAPGALITPTPFLPAESTSMLSTP-APARPTTFSFTPASKPL 248
           V +   S  AP  L TPT   P   TS  + P AP  PT+ +  P   P+
Sbjct: 512 VGTIGTSPTAPANLTTPTT-APVNPTSSTTAPTAPVNPTSPTTAPTVPPV 560


>Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical
           protein C35A5.4 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 349 TPTPFLPAESTSMLSTPAPARPT--TFSFTPASKPLWSLELLN 227
           TPT       T   STP+PA+P   T + TP  KP+ + E L+
Sbjct: 303 TPTTKKTQSVTPSNSTPSPAKPATPTKTPTPTKKPVENNETLS 345


>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical protein
            ZK512.5 protein.
          Length = 1232

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 472  PGPTCQLSAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAP 293
            P PT    +  ++  T ++ +++ V  S+   S L    L  P P LP      +STP P
Sbjct: 876  PPPTLVTESSSESTFTDKSDSSVTVAASASRTSTLTSSTL-PPPPSLPKTIEKPISTPPP 934


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 26/79 (32%), Positives = 33/79 (41%)
 Frame = -3

Query: 487 AKCTEPGPTCQLSAQWKAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSML 308
           A   EP P  + +A + A ++    T      +     A AP A  TP P   AE     
Sbjct: 527 APAAEPAPAAEAAAGYDAPSSVPEETPAPAPAADET-PAPAPAAEETPAPAPAAEE---- 581

Query: 307 STPAPARPTTFSFTPASKP 251
            TPAPA P     TPA+ P
Sbjct: 582 -TPAPA-PAA-EETPATAP 597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,131
Number of Sequences: 27780
Number of extensions: 284458
Number of successful extensions: 1127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)