Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060097.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.89 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.3  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 412 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLS 305
           TN+   +++   S ++      P   LPA STS+ S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINS 868


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 424 TWSQLSTALKAGRLDPALYTXQRSSLGKTLAILGLWQGRPRSXPL 558
           TW      L   RLD  +Y   R  LG   + LG W    RS  L
Sbjct: 541 TWIHPWLPLLRNRLDTLIYPIIRRKLG---SALGGWHPSDRSARL 582


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 303 HQLQHDRPPSASRLRPNLFGHLS 235
           H   HD PP  S     LF H S
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFS 155


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 303 HQLQHDRPPSASRLRPNLFGHLS 235
           H   HD PP  S     LF H S
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFS 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,188
Number of Sequences: 438
Number of extensions: 3714
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)