Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060096.seq
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 2e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.001
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 0.002
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 36 0.005
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.008
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.011
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.015
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 34 0.015
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.045
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.078
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.10
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.24
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 30 0.24
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 30 0.24
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.31
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.42
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.42
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.55
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.73
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 29 0.73
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.7
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.7
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 2.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 2.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 3.9
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 3.9
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 5.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.1
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 6.8
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.0
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.0
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 8/52 (15%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNK 273
K+FIG L+ +TT+ LR FE++G V++C ++R+ +GF+T+K K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
Score = 34.3 bits (75), Expect = 0.015
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G L +T +R+ F++FG V++C ++R+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T K+FVG + E R F +FG V++ ++
Sbjct: 246 TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Frame = +3
Query: 255 HMENEQVGREAIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 431
+ N + G +A+ LN L+ G+ +I + + T +F+ NL + +
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHD 186
Query: 432 LFQKFGTVVECDIV-------RNYGFVHLDA 503
F FG ++ C + + YGFVH D+
Sbjct: 187 TFSAFGKILSCKVAVDELGNAKGYGFVHFDS 217
Score = 33.1 bits (72), Expect = 0.034
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPT-------TKIFVGNLTDK 407
F H ++ + AI+++NG L++ + + + SR+ + T +++ NL +
Sbjct: 212 FVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTE 271
Query: 408 TRAPEVRELFQKFGTVVECDIVRN 479
E +LF +FG + +V++
Sbjct: 272 ITEQEFSDLFGQFGEITSLSLVKD 295
Score = 29.1 bits (62), Expect = 0.55
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVTWKTNKSAAK 285
+FI NL D+ + L+ F +GT+ I+ + +GFV + T + A K
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANK 419
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 37.5 bits (83), Expect = 0.002
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV 255
++F+G + + T D+ F+ YG +++C ++ +GFV
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFV 42
Score = 35.9 bits (79), Expect = 0.005
Identities = 10/42 (23%), Positives = 27/42 (64%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
T++FVG + + ++ + F+ +G +++C ++ +GFV ++
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVE 45
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 267 EQVGREAIQNLNGELVHGQAIKIEA---AKSRKAPSTPT 374
E+ R A+ +LNGE++ GQA+ + A + P P+
Sbjct: 144 EEDMRNALTSLNGEVIKGQAVTLREDPDAANEPLPEVPS 182
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +1
Query: 142 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAK 285
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV + TN+ A+
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCAR 412
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPE-VRELFQKFGTVVECDIVRNYGFV 491
+++F+G+L K+ + + ++F+ +G + + + NYGFV
Sbjct: 363 SRLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFV 402
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.1 bits (77), Expect = 0.008
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Frame = +3
Query: 303 GELVHGQAIKIEAAKSRKAPST---------PTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
G + HG+ +K+ A+ P + + +F+GNL E+ E F KFG +
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 456 VECDIV--RNYGFVH 494
I+ +N FVH
Sbjct: 326 EHIKILSKKNIAFVH 340
Score = 30.3 bits (65), Expect = 0.24
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSAAKPFRILT 303
+FIGNL E ++ F K+G + I+ +N FV + + A K R L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVTWKTNKSAAK 285
++ ++SD T +L + +YG + ++N GFV + +A K
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMK 550
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 91 FFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWK 264
F+ + P + T +F+G LS +E +L+ LF+ +G +V I + GFV +
Sbjct: 287 FYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFV 346
Query: 265 TNKSA 279
+SA
Sbjct: 347 NRQSA 351
Score = 28.7 bits (61), Expect = 0.73
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFV 491
T + +FVG L+ E++ LFQ FG +V I + GFV
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFV 343
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.3 bits (75), Expect = 0.015
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVTWKTNKSAAKPFR 294
F++F+GNL + + L F +Y ++V+ +VR+ +GFV++K + K +R
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTV 219
F++F+G LS T ++++R LFE GTV
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTV 70
Score = 31.5 bits (68), Expect = 0.10
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTV 455
++FVG L+ T+ E+R LF+ GTV
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTV 70
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.045
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY--GFVHL 497
+F+G +T R P +R +F++FG+V + NY GF+ +
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKM 448
Score = 29.1 bits (62), Expect = 0.55
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVTWKTNKSAAK 285
+F+G ++ E LR +FE++G+V + NY GF+ +A K
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEK 456
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.9 bits (69), Expect = 0.078
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV--RNYGFVH 494
+F+GNL + E+RE + FG + + IV RN FVH
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVH 247
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVTWKTNKSA 279
G + I+IGN D T L+ FE++G + + R N FV + + SA
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASA 462
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Frame = +3
Query: 288 IQNLNGELVHGQAIKIEAAK-SRKAPST--------PTTKIFVGNLTDKTRAPEVRELFQ 440
+ N++G ++ + +KI K S PS + I++GN D ++E F+
Sbjct: 376 MSNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFE 435
Query: 441 KFGTVVECDIVR--NYGFVH 494
+FG + + R N FV+
Sbjct: 436 EFGEIEYVNFFREKNCAFVN 455
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.10
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 282 EAIQNLNGELV--HGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVRELFQKF 446
E +Q++N + V + ++ ++ + + AP +FV + + + E++++F KF
Sbjct: 65 EPLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKF 124
Query: 447 GTVVECDIVR 476
GTV I+R
Sbjct: 125 GTVTHVRIMR 134
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.18
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 321 QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
Q I + ++ P PT ++FV N++ + ++R F+ FG V + D+ N
Sbjct: 77 QTINYDYNENSLGPEPPT-QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.24
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
P +FV L T+ ++ +F +FG ++ C ++R+
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRD 278
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.24
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 124 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIV 237
P + IF+G L T L LF KYG V++C I+
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKII 398
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 360 PSTPTTKIFVGNLTDKTRAPE--VRELFQKFGTVVECDIV 473
P IFVG L D + +LF K+G V++C I+
Sbjct: 360 PPIDPYSIFVGQL-DPVNCTHYLLVDLFSKYGKVIDCKII 398
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 387 VGNLTDKTRAPEVRELFQKFGTV 455
V NL+D TR E+R+LF++FG +
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGI 228
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.31
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
T +F+G LS + L FE+YGT+V ++ + YG+V ++T ++A
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA 317
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVTWKTNKSAAK 285
+F+GNLS TE DL F G + + ++ +G+VT+ SA K
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.42
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
+++VGNL+ + R E++E + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 237
++++GNLS + +L+ + G V+ C+I+
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL 98
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.42
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 13/56 (23%)
Frame = +3
Query: 363 STPTT---KIFVGNLTDKT--RAPEVRELFQKFGTVVEC--------DIVRNYGFV 491
STPT +FV NL D ++ ELF KFG + C +I + YGFV
Sbjct: 412 STPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFV 467
Score = 28.7 bits (61), Expect = 0.73
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 324 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 449
A++ + K++++ I+VGNL ++ ++ ELF+ FG
Sbjct: 3 ALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFG 44
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYG 213
I++GNL +DL LFE +G
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFG 44
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRP----LFEKYGTVVE 225
+++ NL+DK + DLR LF YGTVV+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVD 36
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.73
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTV 219
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
+ A + + P++ +FVGNL +T +++E F + G +
Sbjct: 215 KTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 28.7 bits (61), Expect = 0.73
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+F+ LS T E+D+ F +YG + +VRN
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+F+ L+++ T +L FE+ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+FV L ++ + E+ + F++ G V + IVR+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTV 219
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVTWKTNKSAAKPFRILTAS 309
+FI NLS K T ++ LF +YG V + + R FV ++ + A + L+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 310 *FM 318
FM
Sbjct: 74 NFM 76
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +1
Query: 100 HSNP*SKMPGTG-TFKIFIGNLSDKTTEADLRPLFEKYGTV--------VECDIVRNYGF 252
H N S M T T ++I L T++ +L ++G V +E ++ + YGF
Sbjct: 282 HDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 253 VTWKTNKSA 279
++ KSA
Sbjct: 342 ACFEEEKSA 350
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 3.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTV 219
+ +FI N+ + +E D++ LF++Y +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFI 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
+I+VG L+ + ++ F +FG+V +I+
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 458 DDRPELLKQLADFGRARLVR*ITHEYFSGWRR 363
D + K+ AD A+L +THE GWRR
Sbjct: 473 DQKARKSKERADL-LAKLDNSLTHEQIEGWRR 503
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
PT ++VGNL A V F +GTV
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTV 613
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 291 QNLNGELVHGQAIKIEAAKSRKAPSTPTTK 380
QNL LV GQ IK K + S TTK
Sbjct: 17 QNLTDGLVGGQRIKAPNKKKNRKASKNTTK 46
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 518 DAIKELNGMMVDGQPMKVQLSTSR 589
+A+ LNG +DG+P+ V + S+
Sbjct: 163 EAMNSLNGTEIDGRPIAVDWAVSK 186
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 113 NLKCR-APVLSKSSSGTFLIKPQKPILD 193
+L+C+ +PV+ +S +F K + PILD
Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
I++GNL ++ +F +FG V+ ++VR+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRD 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,013
Number of Sequences: 5004
Number of extensions: 47450
Number of successful extensions: 218
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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