Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060096.seq
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 54 8e-08
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 54 8e-08
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 46 3e-05
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 46 3e-05
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 45 5e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 45 5e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 45 5e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 44 7e-05
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 38 0.006
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 38 0.006
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 38 0.008
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 37 0.010
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 37 0.010
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 37 0.010
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 37 0.010
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 36 0.018
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 36 0.024
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 35 0.041
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 35 0.055
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 34 0.072
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 34 0.072
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 34 0.072
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 34 0.096
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 34 0.096
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 34 0.096
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.13
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 33 0.13
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 33 0.13
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.17
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.17
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 33 0.17
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 33 0.17
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.22
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.22
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 32 0.29
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 32 0.29
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 32 0.29
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.29
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.29
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 32 0.39
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 32 0.39
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.39
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.39
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.39
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 31 0.51
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.51
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.51
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.51
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.51
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 30 1.2
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 30 1.2
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 30 1.2
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 30 1.6
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 30 1.6
AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.6
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 30 1.6
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 30 1.6
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical ... 29 2.7
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 29 3.6
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 29 3.6
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 29 3.6
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 3.6
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 29 3.6
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 4.8
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 28 6.3
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 28 6.3
U50312-2|AAA92319.2| 477|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+K+FVGNL D + +++++FQ F V ECDIV+NY FVH++
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIE 44
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV 255
K+F+GNL D L+ +F+ + V ECDIV+NY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFV 41
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 509 DVNDAIKELNGMMVDGQPMKVQLSTSRVRXAAG 607
DV+ I L G +DG+ + ++ STS++R G
Sbjct: 47 DVDPIITRLTGYTIDGKVVNIKKSTSKLRPTPG 79
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+K+FVGNL D + +++++FQ F V ECDIV+NY FVH++
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFVHIE 44
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV 255
K+F+GNL D L+ +F+ + V ECDIV+NY FV
Sbjct: 4 KLFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKNYAFV 41
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 509 DVNDAIKELNGMMVDGQPMKVQLSTSRVRXAAG 607
DV+ I L G +DG+ + ++ STS++R G
Sbjct: 47 DVDPIITRLTGYTIDGKVVNIKKSTSKLRPTPG 79
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVTWKTNKSAAK 285
+++GN+S +TT+ADLR LF YG + E I + Y FV ++ + A K
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATK 287
Score = 33.9 bits (74), Expect = 0.096
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLD 500
T ++VGN++ +T ++R+LF +G + E I + Y FV +
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYE 280
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSA 279
F +F+G+LS + L+ F K+G V E ++R+ YGFV++ ++A
Sbjct: 135 FHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNA 189
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKI-----EAAKSRKAPSTPT--TKIFVGNLTDK 407
F H E E+ + AIQ +NG L+ G+ + + A ++R+ T T ++V N D
Sbjct: 101 FVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDH 160
Query: 408 TRAPEVRELFQKFGTVVECDIV 473
+ +LF KFG + C+++
Sbjct: 161 YNKETLEKLFAKFGNITSCEVM 182
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 285 AIQNLNGELVHGQAIKIEAAKSRKAPS-TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
A+ +N E +HG+ ++I ++ A + IF+ NL + + F FG ++
Sbjct: 26 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 85
Query: 462 CDIV-------RNYGFVHLD 500
C + + YGFVH +
Sbjct: 86 CKVAIDEDGFSKGYGFVHFE 105
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVTWKTNKSA 279
+++ N D + L LF K+G + C+++ + +GFV + + A
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEA 202
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKI-----EAAKSRKAPSTPT--TKIFVGNLTDK 407
F H E E+ + AIQ +NG L+ G+ + + A ++R+ T T ++V N D
Sbjct: 164 FVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDH 223
Query: 408 TRAPEVRELFQKFGTVVECDIV 473
+ +LF KFG + C+++
Sbjct: 224 YNKETLEKLFAKFGNITSCEVM 245
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 285 AIQNLNGELVHGQAIKIEAAKSRKAPS-TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
A+ +N E +HG+ ++I ++ A + IF+ NL + + F FG ++
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 462 CDIV-------RNYGFVHLD 500
C + + YGFVH +
Sbjct: 149 CKVAIDEDGFSKGYGFVHFE 168
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVTWKTNKSA 279
+++ N D + L LF K+G + C+++ + +GFV + + A
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEA 265
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVTWKTNKSAA 282
K+FIG LS K E +LR +F K+G + +C ++R+ FVT+ TN+S A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF-TNRSCA 195
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ + S P T K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F H ++ + A+ N+ +++ G ++ K + K+F+G L+ K +R
Sbjct: 103 FYHRKDAIEAQGALHNI--KVIEGMHHPVQM-KPADTENRNERKLFIGQLSKKHNEENLR 159
Query: 429 ELFQKFGTVVECDIVRN 479
E+F KFG + +C ++R+
Sbjct: 160 EIFAKFGHIEDCSVLRD 176
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVTWKTNKSAA 282
K+FIG LS K E +LR +F K+G + +C ++R+ FVT+ TN+S A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF-TNRSCA 195
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ + S P T K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F H ++ + A+ N+ +++ G ++ K + K+F+G L+ K +R
Sbjct: 103 FYHRKDAIEAQGALHNI--KVIEGMHHPVQM-KPADTENRNERKLFIGQLSKKHNEENLR 159
Query: 429 ELFQKFGTVVECDIVRN 479
E+F KFG + +C ++R+
Sbjct: 160 EIFAKFGHIEDCSVLRD 176
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVTWKTNKSAA 282
K+FIG LS K E +LR +F K+G + +C ++R+ FVT+ TN+S A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF-TNRSCA 195
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ + S P T K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F H ++ + A+ N+ +++ G ++ K + K+F+G L+ K +R
Sbjct: 103 FYHRKDAIEAQGALHNI--KVIEGMHHPVQM-KPADTENRNERKLFIGQLSKKHNEENLR 159
Query: 429 ELFQKFGTVVECDIVRN 479
E+F KFG + +C ++R+
Sbjct: 160 EIFAKFGHIEDCSVLRD 176
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVTWKTNKSAA 282
K+FIG LS K E +LR +F K+G + +C ++R+ FVT+ TN+S A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF-TNRSCA 195
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ + S P T K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F H ++ + A+ N+ +++ G ++ K + K+F+G L+ K +R
Sbjct: 103 FYHRKDAIEAQGALHNI--KVIEGMHHPVQM-KPADTENRNERKLFIGQLSKKHNEENLR 159
Query: 429 ELFQKFGTVVECDIVRN 479
E+F KFG + +C ++R+
Sbjct: 160 EIFAKFGHIEDCSVLRD 176
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVTWKTNKSAA 282
K+FIG LS K E +LR +F K+G + +C ++R+ FVT+ TN+S A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF-TNRSCA 195
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ + S P T K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F H ++ + A+ N+ +++ G ++ K + K+F+G L+ K +R
Sbjct: 103 FYHRKDAIEAQGALHNI--KVIEGMHHPVQM-KPADTENRNERKLFIGQLSKKHNEENLR 159
Query: 429 ELFQKFGTVVECDIVRN 479
E+F KFG + +C ++R+
Sbjct: 160 EIFAKFGHIEDCSVLRD 176
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ + S P T K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+FIG LS K E +LR +F K+G + +C ++R+
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F H ++ + A+ N+ +++ G ++ K + K+F+G L+ K +R
Sbjct: 103 FYHRKDAIEAQGALHNI--KVIEGMHHPVQM-KPADTENRNERKLFIGQLSKKHNEENLR 159
Query: 429 ELFQKFGTVVECDIVRN 479
E+F KFG + +C ++R+
Sbjct: 160 EIFAKFGHIEDCSVLRD 176
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 NP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+P P T K+F+G + + E D R LFEKYG+V C+I+R+
Sbjct: 44 SPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVTWKTNKSAA 282
K+FIG LS K E +LR +F K+G + +C ++R+ FVT+ TN+S A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTF-TNRSCA 195
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ + S P T K+FVG + + + R LF+K+G+V C+I+R+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD 89
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F H ++ + A+ N+ +++ G ++ K + K+F+G L+ K +R
Sbjct: 103 FYHRKDAIEAQGALHNI--KVIEGMHHPVQM-KPADTENRNERKLFIGQLSKKHNEENLR 159
Query: 429 ELFQKFGTVVECDIVRN 479
E+F KFG + +C ++R+
Sbjct: 160 EIFAKFGHIEDCSVLRD 176
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKI-----EAAKSRKAPSTPT--TKIFVGNLTDK 407
F H E E+ + AIQ +NG L+ G+ + + A ++R+ T T ++V N D
Sbjct: 164 FVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDH 223
Query: 408 TRAPEVRELFQKFGTVVECDIV 473
+ ++F KFG + C+++
Sbjct: 224 YNKETLEKVFAKFGNITSCEVM 245
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 285 AIQNLNGELVHGQAIKIEAAKSRKAPS-TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
A+ +N E +HG+ ++I ++ A + IF+ NL + + F FG ++
Sbjct: 89 AMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 462 CDIV-------RNYGFVHLD 500
C + + YGFVH +
Sbjct: 149 CKVAIDEDGFSKGYGFVHFE 168
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVTWKTNKSA 279
+++ N D + L +F K+G + C+++ + +GFV + + A
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEA 265
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 354 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHLD 500
K T ++FVGNL ++ + E++ELF G + EC + + + F+ LD
Sbjct: 109 KKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLD 158
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVTWKTNKSA 279
TG ++F+GNL ++ E +L+ LF +G + EC + + + F+ T A
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHA 163
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 354 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHLD 500
K T ++FVGNL ++ + E++ELF G + EC + + + F+ LD
Sbjct: 109 KKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLD 158
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVTWKTNKSA 279
TG ++F+GNL ++ E +L+ LF +G + EC + + + F+ T A
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRLDTRAHA 163
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAA 282
TG ++F+GNL ++ E +L+ LF +G + EC + GF + +AA
Sbjct: 113 TGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-YLSGKGFAFLRLISNAA 162
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 354 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFVHL 497
K T ++FVGNL ++ + E++ELF G + EC + + + F+ L
Sbjct: 109 KKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFAFLRL 157
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
T T K+FIG LS +T D++ FE YG V + ++ R +GFVT+ +++ A K
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G L+ +T A +R+ F +FG V EC ++R+
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVTWKTNKSAAKPFRIL 300
+IF+G TTE +LR FEK+ V + +V++ YGF+T++T + A+ R L
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFET-EDQAEEIRKL 125
Query: 301 T 303
T
Sbjct: 126 T 126
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+IFVG T E+RE F+KF V + +V++
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKS 100
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
T T K+FIG LS +T D++ FE YG V + ++ R +GFVT+ +++ A K
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G L+ +T A +R+ F +FG V EC ++R+
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRD 79
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVTWKTNKSAAKPFRIL 300
+IF+G TTE +LR FEK+ V + +V++ YGF+T++T + A+ R L
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFET-EDQAEEIRKL 126
Query: 301 T 303
T
Sbjct: 127 T 127
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+IFVG T E+RE F+KF V + +V++
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKS 101
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 285 AIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
A+ +N E++HG+ ++I + + A IF+ NL V + F FG ++
Sbjct: 114 ALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 462 CDIV-------RNYGFVHLD 500
C + + YGFVH +
Sbjct: 174 CKVATDDEGNSKGYGFVHFE 193
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAI-------KIEAAKSRKAPSTPTTKIFVGNLTDK 407
F H E E + AI+ +NG L+ + + + + K T +FV N +
Sbjct: 189 FVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEH 248
Query: 408 TRAPEVRELFQKFGTVVECDIV 473
++ +F KFG + ++
Sbjct: 249 LDQEKLSAMFSKFGEITSAVVM 270
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 285 AIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
A+ +N E++HG+ ++I + + A IF+ NL V + F FG ++
Sbjct: 114 ALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 462 CDIV-------RNYGFVHLD 500
C + + YGFVH +
Sbjct: 174 CKVATDDEGNSKGYGFVHFE 193
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAI-------KIEAAKSRKAPSTPTTKIFVGNLTDK 407
F H E E + AI+ +NG L+ + + + + K T +FV N +
Sbjct: 189 FVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEH 248
Query: 408 TRAPEVRELFQKFGTVVECDIV 473
++ +F KFG + ++
Sbjct: 249 LDQEKLSAMFSKFGEITSAVVM 270
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
KIF+G L T++ L FE++G + E ++ R YGFVT K SA +
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAER 91
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFV 491
T TKIFVG L T + E F++FG + E ++ R YGFV
Sbjct: 32 TMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFV 81
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 336 EAAKSRKAPSTPTT-KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
E ++R P T +FVG+L + + ++RE F KFG V E I+R+
Sbjct: 118 EPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRD 166
Score = 33.9 bits (74), Expect = 0.096
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +1
Query: 115 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTN 270
SK + F +F+G+L + LR F K+G V E I+R+ YGFV++
Sbjct: 124 SKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRR 183
Query: 271 KSAAK 285
+ A +
Sbjct: 184 EDAER 188
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/49 (28%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVTWKTNKSAAK 285
+++GN+++ E ++R F+++G + E ++ Y FV ++T +SAA+
Sbjct: 258 VYVGNIAN-LGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAAR 305
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 157 NLSDKTTEADLRPLFEKYGTVVECDIV 237
NLS TTE DLR +F ++G + +CD+V
Sbjct: 82 NLSSYTTEKDLRDVFGEFGEINKCDLV 108
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 500
P+ + V NL+ T ++R++F +FG + +CD+V R +GF++ +
Sbjct: 74 PSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFN 125
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.072
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
F++++ ++ +E DL+ +FE +G +V+C + R
Sbjct: 207 FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLAR 240
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 34.3 bits (75), Expect = 0.072
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
F++++ ++ +E DL+ +FE +G +V+C + R
Sbjct: 207 FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLAR 240
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 34.3 bits (75), Expect = 0.072
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
F++++ ++ +E DL+ +FE +G +V+C + R
Sbjct: 207 FRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLAR 240
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 33.9 bits (74), Expect = 0.096
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSA 279
K+FIG LS TT+ L F ++G VV+ ++R+ +GFVT+ + SA
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSA 103
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 33.9 bits (74), Expect = 0.096
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSA 279
K+FIG LS TT+ L F ++G VV+ ++R+ +GFVT+ + SA
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSA 123
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 33.9 bits (74), Expect = 0.096
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSA 279
K+FIG LS TT+ L F ++G VV+ ++R+ +GFVT+ + SA
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSA 124
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSAAKPF 291
+F+ L+ TT+ DL +F ++G + C+IVR+ Y F+ + KS + F
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAF 299
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
P +FV L T ++ +F +FG + C+IVR+
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD 275
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSAAKPF 291
+F+ L+ TT+ DL +F ++G + C+IVR+ Y F+ + KS + F
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAF 299
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
P +FV L T ++ +F +FG + C+IVR+
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD 275
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSAAKPF 291
+F+ L+ TT+ DL +F ++G + C+IVR+ Y F+ + KS + F
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAF 230
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
P +FV L T ++ +F +FG + C+IVR+
Sbjct: 170 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD 206
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSA 279
+I+IG L+ + +E D+ F YG + + + +GFV + + A
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDA 49
Score = 30.7 bits (66), Expect = 0.89
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+I++G LT + ++ F+ +G + + + +GFV D
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFD 44
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSA 279
+I+IG L+ + +E D+ F YG + + + +GFV + + A
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDA 49
Score = 30.7 bits (66), Expect = 0.89
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+I++G LT + ++ F+ +G + + + +GFV D
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFD 44
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSA 279
+I+IG L+ + +E D+ F YG + + + +GFV + + A
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDA 49
Score = 30.7 bits (66), Expect = 0.89
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+I++G LT + ++ F+ +G + + + +GFV D
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFD 44
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 270 QVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 449
Q G+ + G A+ + P P ++ V N+ + R P+++ +F+KFG
Sbjct: 119 QQGQPVVATTAGSTNGSAAVTQPDPSTSSGPDGPK-RLHVSNIPFRFRDPDLKTMFEKFG 177
Query: 450 TVVECDIVRN 479
V + +I+ N
Sbjct: 178 VVSDVEIIFN 187
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVTWKTNKSAAK 285
G ++ + N+ + + DL+ +FEK+G V + +I+ N +GFVT + + A +
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAER 207
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 270 QVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 449
Q G+ + G A+ + P P ++ V N+ + R P+++ +F+KFG
Sbjct: 119 QQGQPVVATTAGSTNGSAAVTQPDPSTSSGPDGPK-RLHVSNIPFRFRDPDLKTMFEKFG 177
Query: 450 TVVECDIVRN 479
V + +I+ N
Sbjct: 178 VVSDVEIIFN 187
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVTWKTNKSAAK 285
G ++ + N+ + + DL+ +FEK+G V + +I+ N +GFVT + + A +
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAER 207
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 237
T ++F+ NL T E DL+ LF+KYG V E +V
Sbjct: 278 TGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVV 311
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
T ++ + NL TE LR FEKYG + + +
Sbjct: 2 TTRLIVKNLPSTCTEQQLRKFFEKYGQISDASL 34
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+F+G + E DLR LFE++G + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +3
Query: 321 QAIKIEAAKSRKAPSTPTTK-----IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
+A++++ A + P++P K +F+G L+ + EVR LF FG + E ++R
Sbjct: 101 RAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLR 157
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+FVG + ++R LF++FG + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+F+G + E DLR LFE++G + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +3
Query: 321 QAIKIEAAKSRKAPSTPTTK-----IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
+A++++ A + P++P K +F+G L+ + EVR LF FG + E ++R
Sbjct: 101 RAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLR 157
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+FVG + ++R LF++FG + E I+++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKD 63
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 485
K++VGNL R EV ++F K+G + DI G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRG 45
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG----FVTWKTNKSAAKPFR 294
G+ K+++GNL E ++ +F KYG + DI G FV ++ ++ A R
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVR 64
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 485
K++VGNL R EV ++F K+G + DI G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRG 45
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG----FVTWKTNKSAAKPFR 294
G+ K+++GNL E ++ +F KYG + DI G FV ++ ++ A R
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVR 64
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F E+ AI+ LN ++G+ IK+ A + + IFVGNL + +
Sbjct: 58 FVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLY 117
Query: 429 ELFQKFGTVVE 461
+ F FG +++
Sbjct: 118 DTFSAFGVILQ 128
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F E+ AI+ LN ++G+ IK+ A + + IFVGNL + +
Sbjct: 68 FVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLY 127
Query: 429 ELFQKFGTVVE 461
+ F FG +++
Sbjct: 128 DTFSAFGVILQ 138
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
KI + N+S K T++ L+ F +YG + C + R
Sbjct: 113 KIVVSNISAKVTQSQLQSFFSQYGKITSCILPR 145
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
T +F+GN+ E ++R +FE++G V E DI
Sbjct: 168 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
T +FVGN+ + E+R +F++ G V E DI
Sbjct: 168 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
T +F+GN+ E ++R +FE++G V E DI
Sbjct: 168 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
T +FVGN+ + E+R +F++ G V E DI
Sbjct: 168 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 200
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
T +F+GN+ E ++R +FE++G V E DI
Sbjct: 145 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 177
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
T +FVGN+ + E+R +F++ G V E DI
Sbjct: 145 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDI 177
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECD--------IVRNYGFVTWKTNKSAAK 285
K+F+G L +E DLR FE++G V + + RN+ F+ ++ +SA K
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADK 166
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 306 ELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
+ + G++++++ AKSR+ K+FVG L ++R F++FG V
Sbjct: 92 QTIKGKSVEVKPAKSRE-----NKKVFVGGLPSDYSEQDLRSHFEQFGKV 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
KIF+G +S + DL F +YG V + +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQV 60
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECD--------IVRNYGFVTWKTNKSAAK 285
K+F+G L +E DLR FE++G V + + RN+ F+ ++ +SA K
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADK 166
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 306 ELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
+ + G++++++ AKSR+ K+FVG L ++R F++FG V
Sbjct: 92 QTIKGKSVEVKPAKSRE-----NKKVFVGGLPSDYSEQDLRSHFEQFGKV 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
KIF+G +S + DL F +YG V + +
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQV 60
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G + I NLS +TT DLR FE+YG + + I R+
Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRD 53
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G + I NLS +TT DLR FE+YG + + I R+
Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRD 53
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
KIFVG LT T +RE + +FG + + ++R+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTW--KTNKSAA 282
KIF+G L+ TT+ +R + ++G + + ++R+ +GFVT+ KT AA
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
KIFVG LT T +RE + +FG + + ++R+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTW--KTNKSAA 282
KIF+G L+ TT+ +R + ++G + + ++R+ +GFVT+ KT AA
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
KIFVG LT T +RE + +FG + + ++R+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRD 57
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTW--KTNKSAA 282
KIF+G L+ TT+ +R + ++G + + ++R+ +GFVT+ KT AA
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA 80
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSA 279
+++IG L ++ ++ D+ F YG + + + +GFV ++ + A
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDA 48
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLD 500
S T ++VGN+ T E+R+ F FG + E I ++ Y FV D
Sbjct: 124 SGDNTSVYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFD 170
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLD 500
S T ++VGN+ T E+R+ F FG + E I ++ Y FV D
Sbjct: 134 SGDNTSVYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFD 180
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLD 500
S T ++VGN+ T E+R+ F FG + E I ++ Y FV D
Sbjct: 237 SGDNTSVYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFD 283
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI--VRNYGFVHLD 500
S T ++VGN+ T E+R+ F FG + E I ++ Y FV D
Sbjct: 205 SGDNTSVYVGNIASLTE-DEIRQGFASFGRITEVRIFKMQGYAFVKFD 251
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTW 261
+++GNL TE + LF + G+V + ++ + V W
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEMKVNW 86
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVTWKTNKSAAK 285
K+F+ N+ + T+ +L+ LF K+GTV V + FV + T SA K
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQK 738
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +3
Query: 258 MENEQVGREAIQNLNGELVHGQAIKIEAAKSRK------APSTPTTKIFVGNLTDKTRAP 419
MEN+Q ++A+ + V G+ + I A K + + +K+FV N+ +
Sbjct: 639 MENDQKAQQALLK-DRVPVKGRPMFISANDPEKRVGFKFSTTLEKSKVFVRNVHFQATDD 697
Query: 420 EVRELFQKFGTV 455
E++ LF KFGTV
Sbjct: 698 ELKALFSKFGTV 709
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 303 GELVHGQAIKIEAAKSRKAPSTPTTK--IFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
G H Q + A+ + P + T +FV NL+ T + +LF +FG +V I+R
Sbjct: 348 GLAAHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILR 407
Query: 477 N 479
+
Sbjct: 408 D 408
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
I+IG LS +E D+ +F +YG V+ +++R+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRD 72
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/72 (22%), Positives = 30/72 (41%)
Frame = +3
Query: 258 MENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELF 437
M G I+NL+ V + + + + T ++V N D + +LF
Sbjct: 114 MRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLF 173
Query: 438 QKFGTVVECDIV 473
KFG + C+++
Sbjct: 174 AKFGNITSCEVM 185
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVTWKTNKSA 279
+++ N D + L LF K+G + C+++ + +GFV + + A
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEA 205
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 488
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 488
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>AC024845-1|AAF60850.2| 347|Caenorhabditis elegans Hypothetical
protein Y65B4BL.3 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = +2
Query: 53 LVFIFLTCVIYCYSLYIVTHNLKCR 127
L+F F++C ++ Y++Y+V H + +
Sbjct: 104 LIFFFISCTMFLYAVYLVKHETELK 128
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 488
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 107 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 144
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTV--VECDIVRNYGF 488
+F+G L A E+ ++F +FG V V DI ++YG+
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGY 358
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFRIL 300
+F+GN+S +E +R +F K G V+ +V + YGF+ + ++A R L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 309 LVHGQAIKIEAAKSRKAPSTPT-TKIFVGNLTDKTRAPEVRELF 437
++ G+ ++ R P+ ++IFVG LTDK ++R++F
Sbjct: 236 MIDGRRCDVKVPDGRDKQGRPSISRIFVGRLTDKVDEHQLRKVF 279
>AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical
protein Y52D5A.1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 64 IFNLCYILLFFVHSNP*SKMPGTGTFKI-FIGNL 162
IF+L I +F SN K+P +GTF + +IGN+
Sbjct: 615 IFDLPVIYIFLKMSNSIFKLPASGTFVLMYIGNV 648
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLD 500
K++VG L + E+ E+F +FG + + + R + FV D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 509 DVNDAIKELNGMMVDGQPMKVQLSTSRVRXAAG 607
D DA++ L+G + G +V+LST + R G
Sbjct: 51 DAEDAVRALDGSRICGVRARVELSTGQRRGGGG 83
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLD 500
K++VG L + E+ E+F +FG + + + R + FV D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 509 DVNDAIKELNGMMVDGQPMKVQLSTSRVRXAAG 607
D DA++ L+G + G +V+LST + R G
Sbjct: 51 DAEDAVRALDGSRICGVRARVELSTGQRRGGGG 83
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLD 500
K++VG L + E+ E+F +FG + + + R + FV D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYD 47
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 509 DVNDAIKELNGMMVDGQPMKVQLSTSRVRXAAG 607
D DA++ L+G + G +V+LST + R G
Sbjct: 51 DAEDAVRALDGSRICGVRARVELSTGQRRGGGG 83
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
+F+G ++ +T+E+ LR FE YG + + +V +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHD 138
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--------NYGFVTWKTNKSAAKPFR 294
F++F G+L ++ ++ L F KY + + +VR YGFV+++ ++ + R
Sbjct: 203 FRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMR 262
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 237
+G F +++GN +TTE +L F G + IV
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIV 37
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 318 GQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
GQ + + +K S+P +FVGN++DK +R++ + G V
Sbjct: 31 GQHTPAQQSSQQKPDSSP---VFVGNISDKCSDEFIRKILNECGNV 73
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 318 GQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
GQ + + +K S+P +FVGN++DK +R++ + G V
Sbjct: 31 GQHTPAQQSSQQKPDSSP---VFVGNISDKCSDEFIRKILNECGNV 73
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAA 282
+I++G++ E L PLFEK G + + ++ R Y FVT+ + AA
Sbjct: 201 EIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAA 255
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/40 (20%), Positives = 24/40 (60%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+++ N+ + ++ ELF+++ ++ V++Y F+H +
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDYAFIHFN 418
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 237
F +++GN +TTE DL F + G V IV
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIV 36
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 333 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
++ + +R + + +FVGN+ VR +F FGT+
Sbjct: 129 LQKSNARASAAENALTVFVGNMPLTMNEKSVRRIFSDFGTI 169
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTV--VECDIVRNYGFV 255
+F+ N+ ++ TE D+ F +YG + + ++ R GF+
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFL 95
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 2 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 22 VYCVGNSWSLFGVHIFNLCYILLFFV 99
V+C +SLFGVH + ++LFFV
Sbjct: 638 VWCSIGMFSLFGVHATDNAIVVLFFV 663
>U50312-2|AAA92319.2| 477|Caenorhabditis elegans Hypothetical
protein B0222.2 protein.
Length = 477
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 330 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTV 455
K++ + RK PS K +V L D+TR + R + + F T+
Sbjct: 278 KLQNVQQRKTPSGKIRKFYVWLLPDRTRV-DGRNITKLFSTI 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,397
Number of Sequences: 27780
Number of extensions: 268570
Number of successful extensions: 1028
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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