Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060096.seq
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 43 1e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 42 3e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 42 3e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 41 8e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 41 8e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.002
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 40 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.002
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.002
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 39 0.002
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.002
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 39 0.003
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 39 0.003
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 39 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.004
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 38 0.004
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 38 0.005
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.005
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.005
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 38 0.005
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 38 0.007
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.010
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 37 0.010
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 37 0.010
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 37 0.010
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 37 0.010
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 37 0.010
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 37 0.010
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 37 0.010
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 37 0.010
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 37 0.010
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 37 0.010
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.013
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 37 0.013
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 37 0.013
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 37 0.013
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 37 0.013
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 36 0.017
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.017
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.022
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.022
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.022
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.022
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 36 0.022
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 36 0.022
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.038
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.038
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.051
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.051
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.051
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.051
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 35 0.051
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.051
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.051
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.051
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 34 0.067
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 34 0.067
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 34 0.067
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 34 0.067
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.089
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.089
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 34 0.089
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 34 0.089
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.12
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.12
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.12
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.12
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.16
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.16
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.16
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.16
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 33 0.16
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 33 0.16
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.16
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.16
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 33 0.21
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.21
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.21
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.21
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 32 0.27
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.27
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.27
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.27
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 32 0.36
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 32 0.36
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 32 0.36
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 32 0.36
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 32 0.36
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 32 0.36
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.36
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 32 0.36
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.36
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 32 0.36
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 32 0.36
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 0.36
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.36
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.36
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 32 0.36
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.47
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 31 0.47
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 31 0.47
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 31 0.47
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.47
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.47
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 31 0.47
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.63
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 31 0.63
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.63
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 31 0.63
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 31 0.63
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 31 0.63
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 31 0.63
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 31 0.63
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.63
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.83
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 30 1.1
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 30 1.1
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.1
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 30 1.1
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.1
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 1.4
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 1.9
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 1.9
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 29 1.9
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 2.5
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 2.5
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 29 2.5
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 2.5
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 3.3
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 3.3
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 3.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.3
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 29 3.3
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 28 4.4
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 28 4.4
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 5.8
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 5.8
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 5.8
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 5.8
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 28 5.8
At5g55820.1 68418.m06956 expressed protein 27 7.7
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 7.7
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 27 7.7
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 27 7.7
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 27 7.7
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 7.7
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 27 7.7
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 7.7
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 7.7
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 7.7
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 27 7.7
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 27 7.7
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
T KIF+GNL+ +TT DLR FE++G VV+ ++V + YGF+T++ S +
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVR 68
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TKIFVGNLT +T A ++R F++FG VV+ ++V
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSA 279
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + A
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDA 57
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 491
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFV 49
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAKPFRIL 300
+F+GN +T ++DL LF+KYG V D+ Y FV ++ + A R L
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKL 55
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+FVGN +TR ++ LF K+G V D+ Y FV+ +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFE 43
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 136 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAK 285
T +F+ N +T E D+ FE YG V I RN+ FV ++T + A K
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATK 142
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSA 279
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + A
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDA 57
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFV 491
T+++VG L+ +TR ++ LF ++G V + D+ R+Y FV
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFV 49
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 40.7 bits (91), Expect = 8e-04
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Frame = +1
Query: 55 GVHIFNLCYILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
GV LCY + S SK G +F+G LS TTE LR + KYG + +
Sbjct: 37 GVRRALLCYNAGLYDPSGD-SKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRL 95
Query: 235 VRN--------YGFVTWKTNKSAAKPF 291
VR+ YGFV ++T K + +
Sbjct: 96 VRHIVTGASRGYGFVEYETEKEMLRAY 122
Score = 30.7 bits (66), Expect = 0.83
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 354 KAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
KA P +FVG L+ T +RE+ K+G + +VR+
Sbjct: 57 KAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRH 98
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Frame = +3
Query: 285 AIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
AI+ N L++G+ I++ + ++ A +FV NL + ++++F+KFG +V
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS 140
Query: 462 CDIV-------RNYGFVHLD 500
C + R YGFV +
Sbjct: 141 CKVATLEDGKSRGYGFVQFE 160
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVTWKTNKSAAKPF 291
G +F+ NL + T A L+ +F+K+G +V C + R YGFV ++ +A
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 292 RILTAS 309
+ L ++
Sbjct: 170 QTLNST 175
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 246
T KIF+G + TE +L+ F KYG VVE ++R++
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDH 144
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 297 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 477 NY 482
++
Sbjct: 143 DH 144
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G KIFIG L TT F KYG + + I+R+
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 246
T KIF+G + TE +L+ F KYG VVE ++R++
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDH 144
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 297 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
+NG+ V + + A ++ T KIFVG + E+++ F K+G VVE ++R
Sbjct: 83 INGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIR 142
Query: 477 NY 482
++
Sbjct: 143 DH 144
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G KIFIG L TT F KYG + + I+R+
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRD 53
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVTWKTNKSAAK 285
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV + T+K A +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 286 PFRIL 300
R L
Sbjct: 177 AIRAL 181
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 351 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
R+ T K+FVG+L + EV E+F +FG V + ++R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Frame = +1
Query: 130 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVTWKTNKSAAK 285
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV + T+K A +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 286 PFRIL 300
R L
Sbjct: 177 AIRAL 181
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
GT FK+F+G+L+ + TE ++ +F ++G V + ++R+
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 351 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
R+ T K+FVG+L + EV E+F +FG V + ++R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
T K+FVG++ E+R F++ G V+E ++++
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFR 294
IF+ TT+ +L+ FE YG + EC +V + YGFV +KT K A + +
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
+IF+G LS TE L F++YG + EC I+ R +GF+T+ + A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 345 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
K R+ ++IFVG L+ ++ F ++G + EC I+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
+IF+G LS TE L F++YG + EC I+ R +GF+T+ + A
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGA 66
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 345 KSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
K R+ ++IFVG L+ ++ F ++G + EC I+
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIM 44
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +1
Query: 124 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
PG T KIF+G L TE+D + FE++GT + ++ R +GF+T+ + ++
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 280 AK 285
K
Sbjct: 163 EK 164
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
T KIFVG L + + F++FGT + ++ R +GF+ D+
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +1
Query: 124 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
PG T KIF+G L TE+D + FE++GT + ++ R +GF+T+ + ++
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 280 AK 285
K
Sbjct: 163 EK 164
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+FIG +S T E L+ F +G V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ T ++E F FG V+E I+++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKD 40
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
T KIFVG L + + F++FGT + ++ R +GF+ D+
Sbjct: 107 TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFRI 297
KIF+G +S T E LR F KYG VV+ I+ R + FVT+ + + A+ ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++KIFVG ++ T +RE F K+G VV+ I+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFR 294
+IF+G LS + T+ DL F ++G +++C I+ R +GF+T+ ++ + R
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++IFVG L+ + ++ F +FG +++C I+
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Frame = +3
Query: 264 NEQVGREAIQNLNGELVHGQAIKIE-AAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQ 440
N +A+Q LN ++G+ I+I +++ A + +FV NL + E F
Sbjct: 96 NTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFS 155
Query: 441 KFGTVVECDIV-------RNYGFVHLD 500
GT+V C + R YGFV D
Sbjct: 156 GCGTIVSCKVATDHMGQSRGYGFVQFD 182
Score = 35.1 bits (77), Expect = 0.038
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
++V NL D ++RELF +FGT+ C ++R+
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 362
Score = 34.3 bits (75), Expect = 0.067
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVTWKTNKSAAKPFRILT 303
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV ++ + AA+ L
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 304 AS*F 315
F
Sbjct: 287 GKKF 290
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Frame = +1
Query: 85 LLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RN 243
++ +S+ S +G +F+ NL L F GT+V C + R
Sbjct: 116 MIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRG 175
Query: 244 YGFVTWKTNKSA 279
YGFV + T SA
Sbjct: 176 YGFVQFDTEDSA 187
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+T+ + +S
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEES 175
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+FIG +S T E L+ F KYG +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
T KIFVG L E + F +FGT+ + ++ R +GF+ D+
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 172
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ T ++E F K+G +VE I+R+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSA 279
++++GNLS TT+ LR F YG VV+ ++R+ +GFVT+ ++ A
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEA 57
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
++ FIG L+ T++ LR FEKYG +VE +V R +GF+T+ K+
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLD 500
P + F+G L T +R+ F+K+G +VE +V R +GF+ D
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFD 56
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
IF+ L TT +L+ FE YG + EC +V + +GFV +KT K A
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGA 217
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Frame = +1
Query: 127 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFVT++ ++A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 280 AK 285
+
Sbjct: 79 RR 80
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T++ +R+ F+++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFRI 297
K+FIG ++ E LR F KYG VV+ ++ R +GFVT+ ++++A+ +
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 298 L 300
L
Sbjct: 101 L 101
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++K+F+G + +RE F K+G VV+ ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAKPFRIL 300
+F GN E+DL LF KYG V D+ + FV + + A R L
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRAL 55
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 145 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAKPFRILTAS*FM 318
+F+ N + T DL FE YG +V I RN+ F+ ++ + A + +S M
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM 156
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+F GN R ++ LF+K+G V D+ + FV+++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYME 43
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAKPFRIL 300
+F GN E+DL LF KYG V D+ + FV + + A R L
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRAL 55
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 145 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAKPFRILTAS*FM 318
+F+ N + T DL FE YG +V I RN+ F+ ++ + A + +S M
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLM 156
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+F GN R ++ LF+K+G V D+ + FV+++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYME 43
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAKPFR 294
+++GN T +DL LF K+G V D+ Y FV ++ + A R
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
++VGN TR ++ LF KFG V D+ Y FV+ +
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFE 43
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 136 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAK 285
T +F+ N +T E D+ FE YG V+ + RN+ FV + T + A K
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATK 144
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 369 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFV 491
PT +FV N +TR ++ F+ +G V+ + RN+ FV
Sbjct: 93 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFV 134
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
K+F+G L+ +T ++R FE++G ++E I+ + YGFVT++ + SA +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
K+F+G L+ +T ++R FE++G ++E I+ + YGFVT++ + SA +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATR 73
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T E+R F++FG ++E I+
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 37.1 bits (82), Expect = 0.010
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAA---KSRKAPSTPTT--KIFVGNLTDKTR 413
F M N + I NL+G G+A+K+ A K K P P T K+FVGNL+
Sbjct: 130 FVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVT 189
Query: 414 APEVRELFQKFGTVVECDIV--------RNYGFV 491
+ + F++ G VV +V R YGFV
Sbjct: 190 SESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKT 267
K+F+GNLS T L F + G VV +V R YGFV + +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
T KIF+G LS TTE + + FE++G + ++ R +GFVT+ + S
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDS 173
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFR 294
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV + + K R
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = +3
Query: 348 SRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
S ++ T KIFVG L+ T E + F++FG + ++ R +GFV D+
Sbjct: 111 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 264 NEQVGREAIQNLNGE-LVHGQAIKIEAAKS--RKAPSTPTTKIFVGNLTDKTRAPEVREL 434
+E++G + ++ + E H A+ +E+ P +FV L T ++ +
Sbjct: 203 DEELGAQELEEVIREKAAHSSAVVLESIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTI 262
Query: 435 FQKFGTVVECDIVRNY 482
F +FGTVV D++R++
Sbjct: 263 FSRFGTVVSADVIRDF 278
Score = 35.1 bits (77), Expect = 0.038
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 246
+F+ L+ T + DL +F ++GTVV D++R++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDF 278
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +1
Query: 121 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFVT+ ++
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 277 AAK 285
A K
Sbjct: 61 AQK 63
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +1
Query: 121 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFVT+ ++
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 277 AAK 285
A K
Sbjct: 61 AQK 63
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T +R F++FG +VE ++
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
K+FIG LS TTE L F K G VVE IV + +GFVT+ + A K
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQK 90
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
+K+F+G L+ T + E F K G VVE IV
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIV 66
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAKPFRIL 300
+F GN E DL LF KYG V D+ + FV + + A R L
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRAL 55
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 145 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAK 285
+F+ N +D T DL FE YG +V I RN+ F+ ++ + A +
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATR 146
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+F GN R ++ LF+K+G V D+ + FV+++
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYME 43
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
KIF+G L+ +T +R FE++G +VE ++ + YGFVT+K ++A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMR 78
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TKIFVG L +T+ +R F++FG +VE ++
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVI 54
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFR 294
KIF+ L +TT L +FE YG + EC +V + +GFV +KT K A + +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFR 294
KIF+ L +TT L +FE YG + EC +V + +GFV +KT K A + +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
K+F+G L +EA+++ LF KYGT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
K+FVG L EV+ LF K+GT+ + I+R
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
T+ + + N++ +TT DL PLF KYG VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
T + V N+T +T A ++ LF K+G VV+ I R+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRD 50
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPST 368
F E+E ++A++ LNG++V+G+ I +E AK +AP+T
Sbjct: 111 FITFESEDDAQKALKALNGKIVNGRLIFVETAKEVEAPTT 150
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 103 SNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVT 258
S+P S G T K+++ LS +TTE LR FE++G ++ ++V + + F+
Sbjct: 66 SSPPSSSSGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLR 124
Query: 259 WKTNKSAAK 285
++T + A K
Sbjct: 125 YETEEEAMK 133
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +3
Query: 291 QNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
+++ G L+ ++ + S P TK++V L+ +T +R+ F++FG ++ ++
Sbjct: 49 RDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNM 108
Query: 471 V 473
V
Sbjct: 109 V 109
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
K+F+G L+ +T ++R F+++G ++E I+ + YGFVT++ + SA +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATR 73
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T E+R F +FG ++E I+
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVII 49
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 35.9 bits (79), Expect = 0.022
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Frame = +1
Query: 127 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFVT++ ++A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 280 AK 285
+
Sbjct: 79 RR 80
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T++ +R F ++G ++E ++
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.1 bits (77), Expect = 0.038
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
S + I+VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
I++GNL E ++ LF KYG VV+ D+
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.1 bits (77), Expect = 0.038
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
S + I+VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
I++GNL E ++ LF KYG VV+ D+
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTN 270
G T KIF+G L TE + + F+++GT+ + ++ R +GF+T+ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSD 161
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
T KIFVG L E + F +FGT+ + ++ R +GF+ D+
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTN 270
G T KIF+G L TE + + F+++GT+ + ++ R +GF+T+ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSD 161
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
T KIFVG L E + F +FGT+ + ++ R +GF+ D+
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+FIG +S T E LR F YG VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTN 270
G T KIF+G L TE + + F+++GT+ + ++ R +GF+T+ ++
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSD 161
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
T KIFVG L E + F +FGT+ + ++ R +GF+ D+
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ T +R+ F +G VVE I+R+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 145 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAK 285
+F+ N +D T DL FE YG +V I RN+ F+ ++ + A +
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATR 105
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 34.7 bits (76), Expect = 0.051
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRK--------APS-TPTTKIFVGNLT 401
F M + + A+++L G+ +K++ AK++K PS PT +FV NL
Sbjct: 138 FIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLA 197
Query: 402 DKTRAPEVRELFQ-KFGTVVECDIV 473
+ RA ++E F G VV +++
Sbjct: 198 FEARAKHLKEFFDADTGNVVSTEVI 222
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
++ N+ +T D+R LFEKYG+V++ ++
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEM 125
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
S + ++VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
S + ++VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
S + ++VGNL R EV +LF K+G VV+ D+
Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
+++GNL E ++ LF KYG VV+ D+
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL 38
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 34.3 bits (75), Expect = 0.067
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 387 VGNLTDKTRAPEVRELFQKFGTVVECDI 470
V NL++ TR P++ ELF+ FG V C +
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHV 205
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 136 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVTWKTNKSAAK 285
T +F+ N +T E D+ FE YG V+ + RN+ FV + T + A K
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATK 118
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 369 PTTKIFVGNLTD-KTRAPEVRELFQKFGTVVECDIVRNYGFV 491
PT +FV N +TR ++ F+ +G V+ + RN+ FV
Sbjct: 67 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFV 108
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVTWKTNKSAAKPFRILTAS* 312
+++GNLS + T+ DL LF G + E + R+ +GFV + T+ AA ++ A
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQP 334
Query: 313 FM 318
F+
Sbjct: 335 FL 336
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +3
Query: 369 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 494
PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVTWKTNKSAAKPFRILTAS* 312
+++GNLS + T+ DL LF G + E + R+ +GFV + T+ AA ++ A
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQP 330
Query: 313 FM 318
F+
Sbjct: 331 FL 332
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +3
Query: 369 PTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 494
PTT ++ GN+ + ++E+F G + C ++R +YGFVH
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVH 106
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.089
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVE 225
K+++ +S TE D+R +FEKYG V E
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTE 138
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.9 bits (74), Expect = 0.089
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGF 252
+++G+L+ +TTE+DL LF +YG + + + GF
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGF 55
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHL 497
+ ++VG+LT +T ++ ELF ++G + + + GF +
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFI 58
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPF 291
T KIF+G L E +L+ F YG ++E I+ R +GFVT++T S + F
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLF 215
Score = 31.1 bits (67), Expect = 0.63
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = +1
Query: 100 HSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV 255
H + S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 55 HRHSSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFV 112
Query: 256 TWKTNKSAAK 285
T+ + A K
Sbjct: 113 TFADSAVAEK 122
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 333 IEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++ S + S+P K+FVG ++ +T A F KFG VV+ I+
Sbjct: 53 VDHRHSSSSMSSPG-KLFVGGVSWETTAETFANYFGKFGEVVDSVIM 98
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +3
Query: 360 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 494
PST ++VGN+ + P ++E+F G V C ++R +YGFVH
Sbjct: 50 PST-CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVH 97
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPE 422
F H + + AI +LNG + GQ IK+ A ++ ++ IFVG+L +PE
Sbjct: 95 FVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDL-----SPE 149
Query: 423 VRE--LFQKFGTVVECDIVR 476
V + LF F C R
Sbjct: 150 VTDAMLFTCFSVYPTCSDAR 169
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDA 503
KIFVGNL + PE E F++FG + +++ + V +A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNA 207
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
K+F+G L+ T + + F KYG ++E I+ + YGFVT+K K+A +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATR 73
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L T + + F K+G ++E I+
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVII 49
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFRI 297
++++GNL T ++L +F + GTVV+ IV R +GFVT + + A + ++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 298 LTAS 309
+S
Sbjct: 177 FNSS 180
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 330 KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++E K S +++VGNL + E+ ++F + GTVV+ IV
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
I+VGNL R EV +LF K+G +V+ D+
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL 38
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
I++GNL + ++ LF KYG +V+ D+
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL 38
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 300 NGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
+ ++ G+ ++I+ R + S+ T KIFVG + E +E F +FG + E I
Sbjct: 102 DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQI 161
Query: 471 VRNY 482
+R++
Sbjct: 162 MRDH 165
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTW 261
KIF+G L+ +TT A+ F KYG + + I+ R +GFVT+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
KIFVG L +T + E + F K+G + + I+++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKT 267
K+F+GNLS A L LFE G V +++ R +GFVT T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAA 282
G+G ++++GNLS + L LF + G VVE ++ + +GFVT +++
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 283 KPFRILTAS 309
K L +
Sbjct: 305 KAINSLNGA 313
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++A + +P K+FVGNL+ + ++ +LF+ G V +++
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVI 131
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKT 267
K+F+GNLS A L LFE G V +++ R +GFVT T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAA 282
G+G ++++GNLS + L LF + G VVE ++ + +GFVT +++
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 283 KPFRILTAS 309
K L +
Sbjct: 313 KAINSLNGA 321
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++A + +P K+FVGNL+ + ++ +LF+ G V +++
Sbjct: 86 DSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVI 131
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG 249
+++G + TE DL +F +YG +V+ +++R+ G
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKG 72
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
G ++ F+G L+ T + L F +YG V++ I+ R +GFVT+K K+
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKA 61
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
G ++ F+G L+ T + L F +YG V++ I+ R +GFVT+K K+
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKA 61
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
P K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR 240
K+F+G L +E +++ LF +YGT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
K+FVG L EV+ LF ++GT+ + I+R
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Frame = +1
Query: 124 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+++ + ++
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 86
Query: 277 AAK 285
K
Sbjct: 87 VDK 89
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Frame = +1
Query: 124 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+++ + ++
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 277 AAK 285
K
Sbjct: 160 VDK 162
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Frame = +1
Query: 124 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+++ + ++
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 277 AAK 285
K
Sbjct: 160 VDK 162
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+F+G ++ +T +R+ F FG V+E I+++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKD 40
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
F+IF+G+L +E DL+ +F G V E I++N
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKN 248
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKSAAKPFRIL 300
IFI L E +R L + YG + + ++ RN +GFVT+ T+++A + +
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFI 452
Query: 301 TAS 309
S
Sbjct: 453 NNS 455
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 32.3 bits (70), Expect = 0.27
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Frame = +3
Query: 264 NEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEVREL 434
N + A+++LN + + I+I S + PST + +F+ NL + E
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIML--SNRDPSTRLSGKGNVFIKNLDASIDNKALYET 151
Query: 435 FQKFGTVVEC----DIV---RNYGFVHLD 500
F FGT++ C D+V + YGFV +
Sbjct: 152 FSSFGTILSCKVAMDVVGRSKGYGFVQFE 180
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +1
Query: 82 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---R 240
I + + +P +++ G G +FI NL L F +GT++ C D+V +
Sbjct: 115 IRIMLSNRDPSTRLSGKGN--VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK 172
Query: 241 NYGFVTWKTNKSA 279
YGFV ++ ++A
Sbjct: 173 GYGFVQFEKEETA 185
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
K+F+G L+ +T + ++ FE++G ++E ++ + YGFVT++ ++A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
K+F+G L+ +T + ++ FE++G ++E ++ + YGFVT++ ++A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
K+F+G L+ +T + ++ FE++G ++E ++ + YGFVT++ ++A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TK+FVG L +T +++ F++FG ++E ++
Sbjct: 10 TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 506 GDVNDAIKELNGMMVDGQPMKVQLSTSRVRXAA 604
GD A+K+ N + +DG+PMK+++ + ++ AA
Sbjct: 137 GDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAA 169
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 506 GDVNDAIKELNGMMVDGQPMKVQLSTSRVRXAA 604
GD A+K+ N + +DG+PMK+++ + ++ AA
Sbjct: 73 GDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAA 105
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 506 GDVNDAIKELNGMMVDGQPMKVQLSTSRVRXAA 604
GD A+K+ N + +DG+PMK+++ + ++ AA
Sbjct: 139 GDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAA 171
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
KI++G L T + L F+++G ++ ++V + YGFVT+K +SA +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATR 69
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
T TKI+VG L TR + F++FG ++ ++V
Sbjct: 10 TTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVV 45
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAK 285
K+F+GNL L LFE+ GTV +++ R +GFVT T + A K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV 237
F+I++GNL L LF ++G VV+ +V
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVV 239
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVTWKTNKSA 279
+++G L TE +R +F YG+V+ IV + YGFVT+ +SA
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 118 KMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 246
+ P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 84 RQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFR 294
KIF+G L + + DLR F ++G + + I R +GFVT+ N A + R
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR 299
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVTWKTNKSAAKPFRILT 303
+++ NL++ TT+ DL+ F +YG + ++++ +GFV ++ AA+ L
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 304 AS*F 315
F
Sbjct: 91 GHKF 94
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 327 IKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
++ E A ++ ++V NL +++E+F FGTV ++R+
Sbjct: 116 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD 166
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 294 NLNGELVHGQAIKIEAAKSRKAPST--PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECD 467
+LNG L+ ++ +AP P +++VGNL + +LF + G VVE
Sbjct: 215 DLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEAR 274
Query: 468 IV 473
+V
Sbjct: 275 VV 276
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVT 258
F++++GNL L LF ++G VVE +V R +GFVT
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+F+GNL+ L LFE+ GTV +++ N
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K+FVGNL + + LF++ GTV +++ N
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 360 PSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR----NYGFVH 494
PST ++VGN+ + P ++E+F G V ++R +YGFVH
Sbjct: 55 PST-CRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVH 102
Score = 31.5 bits (68), Expect = 0.47
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIE--AAKSRKAPSTPTTKIFVGNLTDKTRAPE 422
F H + + AI +LNG + GQ IK+ A ++ ++ IFVG+L +PE
Sbjct: 100 FVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDL-----SPE 154
Query: 423 VRE--LFQKFGTVVECDIVR 476
V + L+Q F C R
Sbjct: 155 VTDATLYQSFSVFSSCSDAR 174
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 428
F +E+ AI+ LN +HG+ I++ A K +F+GNL +
Sbjct: 70 FIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLY 129
Query: 429 ELFQKFGTV 455
+ F FG +
Sbjct: 130 DTFSAFGVI 138
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G ++++GNL +E DLR +FE +G+V + R+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD 319
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 351 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 31.9 bits (69), Expect = 0.36
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 351 RKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVE 461
+K P T IFV NL P++ ELF+ FG + E
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKE 308
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSAAKPFRIL 300
+F+G L T+ L+ +F +YG +V I + GFV + A + R+L
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRML 316
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
E+ + + P+T +FV L+ +T + +R F +FG V + +V
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVV 88
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATG 509
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEG 87
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDATG 509
+TK+F+G L+ T +R+ F FG VV+ ++ R +GFV+ + G
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEG 87
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 31.5 bits (68), Expect = 0.47
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +1
Query: 121 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVTWKTNKS 276
+P G+ ++FIG L E DLR L E+ G + E ++++ Y FV +KT
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 277 AAKPFRILTAS*F 315
A K L + F
Sbjct: 170 AQKAIEELHSKEF 182
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 139 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGF 252
F ++GNL T E DL+ F ++G V+ ++ ++ F
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHF 45
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 384 FVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
+VGNL T +++ F +FG V+ ++ ++ F +D
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLID 49
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +1
Query: 82 ILLFFVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------R 240
I + + +P +++ G G IFI NL L F +GT++ C + +
Sbjct: 119 IRIMLSNRDPSTRLSGKGN--IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK 176
Query: 241 NYGFVTWKTNKSA 279
YGFV ++ +SA
Sbjct: 177 GYGFVQFEKEESA 189
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Frame = +3
Query: 255 HMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTT---KIFVGNLTDKTRAPEV 425
+ N A++ LN + + I+I S + PST + IF+ NL +
Sbjct: 95 NFSNPNDAYRAMEALNYTPLFDRPIRIML--SNRDPSTRLSGKGNIFIKNLDASIDNKAL 152
Query: 426 RELFQKFGTVVECDIV-------RNYGFVHLD 500
E F FGT++ C + + YGFV +
Sbjct: 153 FETFSSFGTILSCKVAMDVTGRSKGYGFVQFE 184
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +3
Query: 366 TPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV--------RNYGFVHLDA 503
TP+ KIFVG L+ T ++E F FG +V+ +V R +GFV D+
Sbjct: 34 TPS-KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDS 86
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSAAKPFRILTAS 309
IF+G + TE DL+ +F ++G +V I + GFV + A + +L +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGT 336
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTW 261
T KIF+G L T+ + R FE YG V + I+ R +GFV++
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+F+G +S +T E LR F YG V + ++R+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD 40
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 0.63
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDI 470
I+VGNL R E+ ++F K+G +V+ ++
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIEL 38
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 121 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI 234
M G + I++GNL E ++ +F KYG +V+ ++
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIEL 38
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 151 IGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSA 279
+ NLS T LR LF GTVV+C I ++ ++ + ++ A
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEA 399
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 387 VGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLD 500
V NL+ ++R+LF GTVV+C I + +++
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIE 392
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSA 279
IF+G + + DLR F ++G VV I + GFV + KSA
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSA 369
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTW 261
K+FI L+ TT LR LF YG + E ++ + YGFVT+
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTW 261
K+FI L+ TT LR LF YG + E ++ + YGFVT+
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAA 282
G+G ++++GNLS + L LF + G VVE ++ + +GFVT+ +++
Sbjct: 201 GSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 283 KPFRIL 300
+ L
Sbjct: 260 NAIKSL 265
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Frame = +1
Query: 94 FVHSNP*SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYG 249
F P + + K+F+GNL A L LFE G V +++ R +G
Sbjct: 76 FADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFG 135
Query: 250 FVT 258
FVT
Sbjct: 136 FVT 138
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.1 bits (67), Expect = 0.63
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++V NL D ++ ELF +FGT+ C ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +1
Query: 136 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKS 276
T KIF+G L T + R FE YG V + I+ R +GFV++ + S
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDS 163
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR 476
K+F+G ++ T +RE F FG V++ ++R
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMR 39
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 381 IFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+FV NL +T+ P + + F+K G VV ++ N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVN 161
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +3
Query: 327 IKIEAAKSRKAP-STP-----TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ +E +RKAP +TP T +++G + E+ F +FGTV + RN
Sbjct: 38 LPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSAAKPFRILTAS 309
IF+G L T+ DL+ F ++G +V I + GFV + +A + L +
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT 364
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 QVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFG 449
++G + NG G + A +R T T IFVG L ++++ F +FG
Sbjct: 272 RIGPATPRKTNGYQQQGGYMP-SGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFG 330
Query: 450 TVVECDIV--RNYGFV 491
+V I + GFV
Sbjct: 331 EIVSVKIPVGKGCGFV 346
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSAAKPFRILTAS 309
IF+G L T+ DL+ F ++G +V I + GFV + +A + L +
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT 362
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
K++VGNL T+ +R F KFGT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
K+++GNL T LR F K+GT+V ++ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 378 KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+++V N+ ++ ++FQ FGTV+ ++ RN
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRN 142
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 363 STPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYG 485
++P++K+F+G L+ +++ F FG V E I + G
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKG 77
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +3
Query: 252 RHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPS--------TPTTKIFVGNLTDK 407
+H+ E V + I + G +V G A+ + +K++ + + T TK+ V N+ +
Sbjct: 303 KHL-TELVKQGKILSFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFE 361
Query: 408 TRAPEVRELFQKFGTV 455
EVR+LF FG +
Sbjct: 362 ATMKEVRQLFTPFGQI 377
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPST--------PTTKIFVGNLTD 404
F ++ + ++L G ++ G A+ + +++++ P TK+ V N+
Sbjct: 619 FVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAF 678
Query: 405 KTRAPEVRELFQKFGTV 455
+ E+R+LF FG +
Sbjct: 679 EATKRELRQLFSPFGQI 695
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFRIL 300
+F+ +S +TE L F +YG V++ D++ + + +VT+ + + A K L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 301 TA 306
A
Sbjct: 83 NA 84
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 336 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 482
E SR S+ + + + NL R ++R+ F++FG + + + RNY
Sbjct: 34 ERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNY 82
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV 219
G K+++GNL +E LR +FE +G V
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPV 291
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 387 VGNLTDKTRAPEVRELFQKFGTV 455
V NL++ TR P++ ELF FG V
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAV 239
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVTWKTNKSAAK 285
+++G L+ + E D+R F +G + I+ + FVT+ T + A K
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEK 278
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 243
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 133 GTFKIFIGNLSDKTTEADLRPLF 201
G +++IGNL+ TTE D+R LF
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLF 282
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 67 FNLCYILLFFVHSNP*SKMPGTG-TFKIF 150
F LCYI+LF +H++ +KM G F +F
Sbjct: 88 FQLCYIILFIMHTDKKNKMKMLGLLFVVF 116
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 345 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
++R+A S P++ +FV +D ++++F +FG V I+ N
Sbjct: 46 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIAN 92
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 345 KSRKAPSTPTT--KIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
++R+A S P++ +FV +D ++++F +FG V I+ N
Sbjct: 65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIAN 111
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 369 PTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV-RNYGFV 491
P+ + VGN++ E++ LF++FG + +N GF+
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFV 255
+ +GN+S + +L+ LFE++G + +N GF+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFI 256
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
KIF+ L T L F++YG + +C V + YGF+ +K+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
KIF+ L T L F++YG + +C V + YGF+ +K+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
KIF+ L T L F++YG + +C V + YGF+ +K+ A
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGA 194
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRN 479
+ ++FV L+ T +R+LF FG + E ++R+
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRD 41
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 249 FRHMENEQVGREAIQNLNGELVHG-QAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEV 425
F+H EN++ RE ++N N + G Q IKI + + + D A V
Sbjct: 335 FKHDENDEECREEVENSNSQGKRGDQCIKISVPTESFTLHHEVDSVSISSSGD-AYASIV 393
Query: 426 RELFQKFGTVVECDIVRN 479
E + G V + DI+++
Sbjct: 394 PECLLESGHVNDIDILQS 411
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 127 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 225
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++K+FVG L+ T +++ F FG V E ++
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 372 TTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIV 473
++K+FVG L+ T +++ F FG V E ++
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVTWKTNKSAAKPFRIL 300
+++ NLS+ E LR +F YG +V ++ + +GFV + + + + R L
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYL 364
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = +1
Query: 142 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSA 279
KIF+ L T L F++YG + +C V + YGF+ +K+ A
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGA 182
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVTWKTNKSAAKPFRIL 300
+F+GN+ TE LR + + G VV +V + YGF +K ++A R L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNY 482
T + V NL R ++R+ F++FG V + + R+Y
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDY 71
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLD 500
T+++VGNL + E+ + F+ FG + + R Y F+ D
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFD 46
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 375 TKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVR---NYGFVHLD 500
T+++VGNL + E+ + F+ FG + + R Y F+ D
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFD 46
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 463 HSTTVPNF*NSSRTSGARVLSVKLPTNILVVGVDG 359
H T+ N +++TSG S+K P+ G++G
Sbjct: 1270 HKVTILNLPETAQTSGLHEASIKAPSVTFGTGIEG 1304
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 145 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFV 255
+F+G L T+ L+ +F +YG +V I + GFV
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFV 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,783,869
Number of Sequences: 28952
Number of extensions: 245807
Number of successful extensions: 1140
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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