Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060095.seq
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    28   1.3  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    28   1.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.0  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   4.0  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   5.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.2  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   9.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   9.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.1  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   9.1  

>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +2

Query: 326 KGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLK 472
           K ERE+ E L  E+    K   V +LPA V   T KGD  +  LTK  +
Sbjct: 146 KSEREVAEKLANELEKSDKTVFVNNLPARV--VTNKGDYKD--LTKHFR 190


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +2

Query: 311 KALHTKGE--RELVEFLTEEIVAERKA--QKVKSLPAEVEGFTVKGDGAEVVLTKQLKDE 478
           ++ HT G    +L+  L+ EI  E+     ++   P   +   V+G  A VVL  +  DE
Sbjct: 49  RSSHTAGNPRSKLINALSSEIDYEKNQVLSEISLPPVNYDIEDVQGS-AVVVLKAKHGDE 107

Query: 479 TIRVTFNVN 505
            IR+T NV+
Sbjct: 108 NIRITMNVS 116


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 501 TLNVTRIVSSLSCFVKTT-SAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 328
           +LN T   ++ S  + +T S+ +P T   ST+A          SAT SS + +TSSL P
Sbjct: 231 SLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSA------SATSSSAQYNTSSLLP 283


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 480  VSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 343
            V+ LS   K+ S      V  S+++G ++   +  SA ISS++NST
Sbjct: 1347 VNMLSHKRKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNST 1392


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 490 DTNCFIFKLLC*NNFSTVSLYSKAFDFSRERL--DLLCFAFSNYFFCQELY 344
           +TN F++ + C   + TVSL S A +        D +C+ + N     EL+
Sbjct: 15  ETNDFLYLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELF 65


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 432 FTVKPSTSAGRDLTFCALR--SATISSVRNSTSSLSPFV*SAFNPQPQLQ-VLEWLCSKL 262
           F++ P   A    TFCAL   S  +  + NS+ + S    +  +  P+++ ++ WL S+ 
Sbjct: 186 FSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMDCVPKVERLIRWLASRQ 245

Query: 261 VEAG 250
           + +G
Sbjct: 246 LSSG 249


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
 Frame = -2

Query: 561  ELLLLSLNITLKVIRVHR*LTLNVTRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTF-C 385
            ELL+   NI LK +       L+   ++ SL C     SA   + + PS    RD     
Sbjct: 701  ELLVRVPNIDLKPLSTSEICFLSAVLLLESLRCKSNKLSALVEYLLDPSL---RDSQLPQ 757

Query: 384  ALRSATISSVRNSTSSLSPFV*SAFNPQPQLQVLEWLCSKLVEAGSHLTFE 232
            ++R+  + ++ +   SLS     A +   + Q L  LC   V+    L  E
Sbjct: 758  SIRAIALYNLTSFVESLSKERRVASSTIDEFQKLLCLCCNRVDCVRQLALE 808


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 193 FTA-VCVRLTNPLKFAVLTHVCSTLWVALTMPLIFPA 86
           FTA VCV   NPL+ ++   V  ++ + +T P++F A
Sbjct: 101 FTAWVCV---NPLEKSIFGKVAFSVTIGITCPIVFIA 134


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
 Frame = -2

Query: 480 VSSLSCFVKTTSAPSPFTVKPSTSAG--RDL----TFCA---LRSATISSVRNSTSSLSP 328
           ++S+S    +T  PS   V+PSTS     D+    +F A   L S +IS+  N+ S  +P
Sbjct: 137 MTSMSSITSSTPTPSQLPVRPSTSLSFFDDIPLGPSFSAETILSSLSISTSNNAMSKTTP 196


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 193 FTAVCVRLTN-PLKFAVLTHVCSTLWVALTMPL 98
           FT +  +  N P+   +   VCS  W+ L+ PL
Sbjct: 257 FTPILYKTNNNPIILPITVTVCSCWWLILSTPL 289


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 477 SSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLS 331
           S+++    T S P P T  PST     +T  +L S   +S    T+S S
Sbjct: 680 SNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTS 728


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 364 FFCQELYQFSFTFRVKRL 311
           F CQ LY+FS +FR KR+
Sbjct: 2   FSCQSLYKFSHSFR-KRI 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,763
Number of Sequences: 5004
Number of extensions: 46078
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)