Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060095.seq
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0072 - 31469595-31469684,31469762-31469848,31469968-314700...    33   0.19 
08_02_1354 - 26337628-26338540,26339638-26339981                       32   0.33 
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           30   1.3  
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    28   7.1  
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202           27   9.4  
04_04_0056 + 22406872-22407258,22408405-22409310                       27   9.4  

>03_06_0072 -
           31469595-31469684,31469762-31469848,31469968-31470036,
           31470117-31470185,31470269-31471306
          Length = 450

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = -2

Query: 456 KTTSAPSPFTVKPSTSA-GRDLTFCALRSATISSVRNSTSSLSPFV*SAFNPQ---PQLQ 289
           ++ +  +P    PS+ A G  + F +   +    V  S+ S SP + SAFNP    P LQ
Sbjct: 103 RSCATKAPVNDPPSSLAIGLLMVFTSGMGSATGRVGASSLSASPSISSAFNPAALLPFLQ 162

Query: 288 VLEWL-CSKLVEAGS 247
             +WL CS L+ + +
Sbjct: 163 ATKWLPCSDLITSAA 177


>08_02_1354 - 26337628-26338540,26339638-26339981
          Length = 418

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 444 APSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSP 328
           +PSP T  PST+ GRD   C  R   +  + N   +L+P
Sbjct: 168 SPSPATRSPSTTLGRDRYCCLTREDIVRFLINCLGALAP 206


>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 341 LVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQL 469
           LV F+   ++ E K + ++ L  E+E F  + +G+EV L++ +
Sbjct: 461 LVGFIFTLLLPESKGKSLEDLTGEIEEFQEEDEGSEVALSRPI 503


>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 456 KTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 358
           +  + PS   +  + + GR LTF  LRSA +S+
Sbjct: 41  RADACPSAVALADAAAGGRALTFAELRSAVLST 73


>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
          Length = 288

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 251 PASTSLLHNHSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQKV 394
           P +T  +       SC  GL AL  KG     + L  +  AE+KA +V
Sbjct: 213 PTTTPSMVGSYEQVSCFSGLPALPMKGSISFGDLLAMDTSAEKKAIRV 260


>04_04_0056 + 22406872-22407258,22408405-22409310
          Length = 430

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 480 VSSLSCFVK-TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSL 334
           +SS SC    TT+AP P T   + +AG     CA  +AT + V      L
Sbjct: 29  LSSSSCAASPTTAAPVPGTAPRAAAAGDGDEGCAAAAATPADVGGDEDDL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,487
Number of Sequences: 37544
Number of extensions: 308617
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)