Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060095.seq
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     30   1.4  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        28   5.5  
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)                    28   7.3  
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  27   9.7  

>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 377 RKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKD--ETIRVTFNVNHLWTLMTLRVMFRLR 550
           R+ QK++SL A++EG             ++L+D  E  RVT    HL  L  L+V F  R
Sbjct: 252 REYQKIESLRADLEGAHNSSAQEHAHQLQELRDEMEQQRVTLRKGHLAELEALKVDFERR 311


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 241 NLREQLMCHIPLVKSRFTAVCVRLTNPLK 155
           N++EQ++  +P+  +RF +VC  L N LK
Sbjct: 841 NMKEQMLSMVPV--ARFESVCEELNNALK 867


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 318 SAFNPQPQLQVLEWLCSKL 262
           SAFNP+P   ++EW+  +L
Sbjct: 146 SAFNPKPSPSIIEWIAKEL 164


>SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)
          Length = 267

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -1

Query: 451 NFSTVSLYSKAFDFSRERLDLLCFAFSNYFFCQELYQF 338
           +FST+ ++S    +S   ++   F F +  +C++L++F
Sbjct: 101 HFSTLLVFSNILMYSNSAINPFIFVFLHSRYCKDLFRF 138


>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 462 FVKTTSAPSPFTVKPSTSAGRDLTFCALR-SATISSVRNSTSSLSPFV*SAFNP 304
           F   TS P+PFTV        D+T C L  S    +V  S   L+P++  A  P
Sbjct: 314 FCYGTSLPNPFTVYHDDVGIIDVTTCCLSGSPPGEAVNTSCELLTPWLDKALIP 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,817,405
Number of Sequences: 59808
Number of extensions: 356905
Number of successful extensions: 1009
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)