Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060095.seq
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    36   0.024
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    31   0.52 
U41263-11|AAO38595.1|  516|Caenorhabditis elegans Hypothetical p...    30   1.2  
U41263-10|AAO38593.1|  610|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical...    30   1.2  
AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8 prot...    30   1.2  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   3.7  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   8.5  
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    27   8.5  
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    27   8.5  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 338 ELVEFLTEEIVAERKAQKVK---SLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNH 508
           EL + L  EI AE++        ++     GF V    AEV LTK+   E I V FNVNH
Sbjct: 41  ELQQALNREIEAEQQLSSDNLQGAVAPTFAGFQVTNKDAEVRLTKKNGSEDILVVFNVNH 100


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
            protein K09F6.3 protein.
          Length = 1360

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 305  GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETI 484
            G K    K  REL     + I AE+K +++K L A+V+    KG+  +    K+++D   
Sbjct: 823  GTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAKVDYEKQKGEKIKEEAEKEIQDHRK 882

Query: 485  RV 490
            +V
Sbjct: 883  KV 884


>U41263-11|AAO38595.1|  516|Caenorhabditis elegans Hypothetical
           protein T19D12.2c protein.
          Length = 516

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 474 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 325
           S +CF   +S PSP T  P T       F     +T +S+  STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428


>U41263-10|AAO38593.1|  610|Caenorhabditis elegans Hypothetical
           protein T19D12.2a protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 474 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 325
           S +CF   +S PSP T  P T       F     +T +S+  STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428


>AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 489 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 337
           T   S+ S F  T+S P      P  S   D +FC+  SAT S     T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490


>AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 489 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 337
           T   S+ S F  T+S P      P  S   D +FC+  SAT S     T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490


>AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8
           protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 489 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 337
           T   S+ S F  T+S P      P  S   D +FC+  SAT S     T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
 Frame = +2

Query: 236 KVRWDPASTSLLHNHSNTCSCGCGL--KALHTKGERELVEFLTEEIVAERKAQKVKSLPA 409
           ++R D  S   L  + N C   CG+  K + TK ++++ E   E    E   +  K +  
Sbjct: 492 EIRVDKLSDHKLQEYVNKCGLFCGIERKNVLTKKQQKVYEKRCEGDTNELD-KDCKDIVV 550

Query: 410 EVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHLWTLMTLRVMFRLRSKSSLRC 571
           E  G  + GD AE  L        ++    V  ++    L+   RLR  +  +C
Sbjct: 551 EKLGERMYGDFAEKCLEPINACSMLKTRRLVRKVYNEYRLKCKPRLRPSTEFKC 604


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 453 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 343
           T S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 473 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 453 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 343
           T S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 453 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 343
           T S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 193 FTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIF 92
           F  VC  LTN +K  V  H C+     L + L+F
Sbjct: 27  FAGVCFSLTNTVKHCVEQHACTNDGKYLVIALVF 60


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 477 SSLSCFVKTTSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 337
           S  S    +T+APS  T  PS+S+     T  +  S+T SS ++STS+
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 477 SSLSCFVKTTSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 337
           S  S    +T+APS  T  PS+S+     T  +  S+T SS ++STS+
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 389 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 273
           SVL   ++F+  G +P+L H S E  + +   C    GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 389 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 273
           SVL   ++F+  G +P+L H S E  + +   C    GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,073
Number of Sequences: 27780
Number of extensions: 264010
Number of successful extensions: 821
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)