Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060094.seq
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 82 5e-16
05_02_0056 - 6191998-6192057,6192132-6192320,6192492-6192649,619... 32 0.49
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 29 2.6
06_01_0096 - 794148-794246,795682-796975,798960-799417 29 3.4
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054... 29 3.4
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 28 6.0
09_04_0527 - 18337968-18338077,18338440-18341212 28 6.0
11_04_0385 - 17022367-17022597,17022738-17022797,17022912-170229... 28 7.9
09_04_0528 - 18348071-18348136,18348477-18351209 28 7.9
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +2
Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFEFLNICQVHG 673
V+ K RR+ +EC ND+N MID AK ADL LLL D S+GFEM+ FEFLNI QVHG
Sbjct: 125 VSGKSRRVQFLECPNDINGMIDAAKIADLALLLIDGSYGFEMDTFEFLNIMQVHG 179
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +3
Query: 264 QRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKTTL 443
++NPKAFA Q+A +A+R R ++ ++ H+P +D++ E GK+ L
Sbjct: 43 RKNPKAFAFQSAAKAKRLQARSAEIEQRRLHVPIMDRSIGEPPPFVVVVQGPPQVGKSLL 102
Query: 444 INNLIKSFIKTNVTNTDGPITMSRLKS 524
I L+K + K N++ GPIT+ KS
Sbjct: 103 IKCLVKHYTKQNLSEVRGPITVVSGKS 129
>05_02_0056 -
6191998-6192057,6192132-6192320,6192492-6192649,
6193714-6193804,6193984-6194158,6194227-6194369,
6194592-6194810,6194899-6195028,6195127-6195193,
6195263-6195357,6195454-6195525,6195613-6195668,
6196453-6196455,6197948-6198017,6198173-6198246,
6198334-6198468,6200273-6200362
Length = 608
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFE 646
+R HY V + + + N D + +A C++L L+ DA GF +++E
Sbjct: 384 QRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYE 435
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFE 646
+R HY V + + + N+D + +A A+L L+ DA GF +++E
Sbjct: 474 QRYHYNVADARLHQHIEKGNDDGLFISSVASSANLWALIMDAGTGFTSQVYE 525
>06_01_0096 - 794148-794246,795682-796975,798960-799417
Length = 616
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 147 FCWYFYLHLRIPILFP 100
FC YF HL +P+LFP
Sbjct: 105 FCSYFITHLLLPVLFP 120
>01_06_0677 -
31104736-31104897,31105046-31105234,31105313-31105470,
31105558-31105648,31105787-31105961,31106065-31106204,
31106293-31106511,31106589-31106718,31107163-31107229,
31107347-31107441,31107535-31107606,31107681-31107736,
31107995-31108060,31108151-31108264,31108787-31109092
Length = 679
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMID-IAKCADLVLLLCDASFGFEMEIFE 646
+R HY V R + I+ N+ I I C++L L+ DA GF +++E
Sbjct: 421 QRYHYNVADS-RLVQHIDKGNEDGLFISCITSCSNLWALIMDAGTGFTSQVYE 472
>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Frame = -3
Query: 672 PCT*HMFKNSNISISKPK---LASHR----SSTRSAHLAMSIIEFTSL 550
PC H+ ++ + + P+ LASH ++TRS HLA+SI F L
Sbjct: 947 PCALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRL 994
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 524 RRITLIECNNDVNSMID 574
RR++++ CNND+ S ID
Sbjct: 548 RRVSVLRCNNDIRSSID 564
>11_04_0385 -
17022367-17022597,17022738-17022797,17022912-17022997,
17023056-17023218,17023540-17023598,17023693-17023798,
17023927-17023993,17024109-17024222,17024664-17025077,
17025799-17025887
Length = 462
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 500 HYYVTSKKRRITLIECNNDVNSMIDIAKC 586
H V K R + ++E N +V +M+DIAKC
Sbjct: 82 HKMVQGKFRHLPVVE-NGEVIAMLDIAKC 109
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +2
Query: 509 VTSKKRRITLIECNNDVNSMIDIAK-----CADLVLLLCDASFGFEMEIFEFLNICQVHG 673
V S RR+++++CN+++ S +D ++ D + L AS+ F ++L + ++ G
Sbjct: 542 VGSDSRRVSVLQCNSEIRSTVDPSRLRTFLAFDTSMALSSASY-FIFSESKYLAVLELSG 600
Query: 674 M 676
+
Sbjct: 601 L 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,509
Number of Sequences: 37544
Number of extensions: 284425
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -