Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060094.seq
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    81   9e-16
At1g75530.1 68414.m08778 forkhead-associated domain-containing p...    34   0.075
At2g25760.2 68415.m03092 protein kinase family protein contains ...    33   0.17 
At2g25760.1 68415.m03091 protein kinase family protein contains ...    33   0.17 
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf...    32   0.40 
At5g18190.1 68418.m02135 protein kinase family protein contains ...    29   3.7  
At4g33620.1 68417.m04775 Ulp1 protease family protein low simila...    28   6.5  

>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 35/55 (63%), Positives = 42/55 (76%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFEFLNICQVHG 673
           V  K+RR   +EC ND+N+M+D AK ADL LL+ D S+GFEME FEFLNI QVHG
Sbjct: 122 VQGKQRRFQFVECPNDINAMVDCAKVADLALLVVDGSYGFEMETFEFLNIMQVHG 176



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/83 (30%), Positives = 43/83 (51%)
 Frame = +3

Query: 261 RQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKTT 440
           +Q+N KAF +++ V A++      +   K+ H+P++D+   E              GK+ 
Sbjct: 39  KQKNLKAFGVKSVVHAKKAKHHAAEKEQKRLHLPKIDRNYGEAPPFVVVVQGPPGVGKSL 98

Query: 441 LINNLIKSFIKTNVTNTDGPITM 509
           +I +L+K F K NV    GPIT+
Sbjct: 99  VIKSLVKEFTKQNVPEVRGPITI 121


>At1g75530.1 68414.m08778 forkhead-associated domain-containing
           protein / FHA domain-containing protein
          Length = 555

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 494 RSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLL--CDASFGFEMEIFE 646
           R+HYY T K+RR+ L E     N+ ID     +   L   CD  FGF+ E  E
Sbjct: 84  RTHYYTTRKRRRLELEESLKVNNNAIDEHLNVEEGNLFGECDDDFGFKFEDIE 136


>At2g25760.2 68415.m03092 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 676

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFE 646
           +R HY VT  +    + + N D   +  +A C DL  L+ DA  GF  ++++
Sbjct: 452 QRYHYNVTDTRLAQHIEKGNEDGLFISSVASCTDLWALIMDAGSGFTDQVYQ 503


>At2g25760.1 68415.m03091 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 673

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFE 646
           +R HY VT  +    + + N D   +  +A C DL  L+ DA  GF  ++++
Sbjct: 449 QRYHYNVTDTRLAQHIEKGNEDGLFISSVASCTDLWALIMDAGSGFTDQVYQ 500


>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 825

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 476 CFYEAFNQVVYECSLTDARWPYDSDHN 396
           CFYE+ ++V+  CS + +   YDSD N
Sbjct: 34  CFYESLDRVLSSCSCSTSNSDYDSDPN 60


>At5g18190.1 68418.m02135 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 691

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEIFEFLNI 658
           +R HY V   +    + + N D   +  +A  A+L  L+ DA  GF  +++E   +
Sbjct: 467 QRYHYNVADSRLHQHVQKGNEDGLLISCVASAANLWALIMDAGTGFTSQVYELSTV 522


>At4g33620.1 68417.m04775 Ulp1 protease family protein low
           similarity to SP|Q9BQF6 SUMO-1-specific protease 2 (EC
           3.4.22.-) (Sentrin-specific protease SENP7) {Homo
           sapiens}; contains Pfam profile PF02902: Ulp1 protease
           family, C-terminal catalytic domain
          Length = 783

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 443 ECSLTDARWPYDSDHNWRRFQRRLVYLGDVLFFGDNVFTPTELSFSSYSILNGESFRISL 264
           E S  +A  P    H       +++ + DV+ +GD   T ++L+FS  + +N ES  ++ 
Sbjct: 125 EVSTGEATNPASDPHEVDPENAQVLIIPDVIIYGDIYCTNSKLTFSR-NCMNVESSSVNA 183

Query: 263 TSARL--DWSI 237
           T       W+I
Sbjct: 184 TKGTFSCQWTI 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,659
Number of Sequences: 28952
Number of extensions: 234114
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)