Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060093.seq
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.78 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.2  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.6  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 174 LIENCFVCHFCWYFYLHLRIPILF----PCSFQVHL*QNIRHVFEKKKKKTRD 28
           ++ +    H C+  Y++    I F     C F   +  NI HVF K++   +D
Sbjct: 53  ILTSSVTLHVCFNSYMYAFTHIFFFFAICCDFIALIVVNIVHVFRKRRVNYKD 105


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 44  FFFSKTCLIFCYKCTWKEHGN 106
           FFFS  C++F     W++  N
Sbjct: 11  FFFSFCCILFFIYLYWQQTSN 31


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 587 RIWLCLSLNLHHYCILSTLSCA 522
           R+  CLS+ +   C++  + CA
Sbjct: 244 RLKKCLSVGMRPECVVPEVQCA 265


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = +2

Query: 443 HKQLD*KLHKNKCNQHRRSHYYVTSKKRRITLIECNNDVNSMI 571
           + Q++      + + +RRS+  +  K+RR  +    N++ ++I
Sbjct: 19  NNQIEMAAATKRVSDNRRSNKPIMEKRRRARINNSLNELKTLI 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,152
Number of Sequences: 336
Number of extensions: 2725
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)