Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060093.seq
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 82 5e-16
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 31 1.1
05_02_0056 - 6191998-6192057,6192132-6192320,6192492-6192649,619... 30 1.5
06_01_0096 - 794148-794246,795682-796975,798960-799417 29 3.5
09_04_0527 - 18337968-18338077,18338440-18341212 28 6.1
11_04_0385 - 17022367-17022597,17022738-17022797,17022912-170229... 28 8.1
09_04_0528 - 18348071-18348136,18348477-18351209 28 8.1
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 8.1
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +2
Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHG 673
V+ K RR+ +EC ND+N MID AK ADL LLL D S+GFEM+ FEFLNI QVHG
Sbjct: 125 VSGKSRRVQFLECPNDINGMIDAAKIADLALLLIDGSYGFEMDTFEFLNIMQVHG 179
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +3
Query: 264 QRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGKTTL 443
++NPKAFA Q+A +A+R R ++ ++ H+P +D++ E GK+ L
Sbjct: 43 RKNPKAFAFQSAAKAKRLQARSAEIEQRRLHVPIMDRSIGEPPPFVVVVQGPPQVGKSLL 102
Query: 444 INNLIKSFIKTNVTNTDGPITMSRLKS 524
I L+K + K N++ GPIT+ KS
Sbjct: 103 IKCLVKHYTKQNLSEVRGPITVVSGKS 129
>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Frame = -1
Query: 675 FPCT*HMFKNSNXSISKPK---LASHR----SSTRSAHLAMSIIEFTSL 550
FPC H+ ++ + + P+ LASH ++TRS HLA+SI F L
Sbjct: 946 FPCALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRL 994
>05_02_0056 -
6191998-6192057,6192132-6192320,6192492-6192649,
6193714-6193804,6193984-6194158,6194227-6194369,
6194592-6194810,6194899-6195028,6195127-6195193,
6195263-6195357,6195454-6195525,6195613-6195668,
6196453-6196455,6197948-6198017,6198173-6198246,
6198334-6198468,6200273-6200362
Length = 608
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFE 646
+R HY V + + + N D + +A C++L L+ DA GF + +E
Sbjct: 384 QRYHYNVADGRLAQHITKGNEDGLFISSVASCSNLWALIMDAGTGFTSQVYE 435
>06_01_0096 - 794148-794246,795682-796975,798960-799417
Length = 616
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 147 FCWYFYLHLRIPILFP 100
FC YF HL +P+LFP
Sbjct: 105 FCSYFITHLLLPVLFP 120
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 524 RRITLIECNNDVNSMID 574
RR++++ CNND+ S ID
Sbjct: 548 RRVSVLRCNNDIRSSID 564
>11_04_0385 -
17022367-17022597,17022738-17022797,17022912-17022997,
17023056-17023218,17023540-17023598,17023693-17023798,
17023927-17023993,17024109-17024222,17024664-17025077,
17025799-17025887
Length = 462
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 500 HYYVTSKKRRITLIECNNDVNSMIDIAKC 586
H V K R + ++E N +V +M+DIAKC
Sbjct: 82 HKMVQGKFRHLPVVE-NGEVIAMLDIAKC 109
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +2
Query: 509 VTSKKRRITLIECNNDVNSMIDIAK-----CADLVLLLCDASFGFEMEXFEFLNICQVHG 673
V S RR+++++CN+++ S +D ++ D + L AS+ F ++L + ++ G
Sbjct: 542 VGSDSRRVSVLQCNSEIRSTVDPSRLRTFLAFDTSMALSSASY-FIFSESKYLAVLELSG 600
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 491 RRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFE 646
+R HY V + + + N+D + +A A+L L+ DA GF + +E
Sbjct: 474 QRYHYNVADARLHQHIEKGNDDGLFISSVASSANLWALIMDAGTGFTSQVYE 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,027,531
Number of Sequences: 37544
Number of extensions: 289061
Number of successful extensions: 766
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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