Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060093.seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)             100   1e-21
SB_20000| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               28   6.2  
SB_37297| Best HMM Match : SCAN (HMM E-Value=4.4)                      28   8.3  

>SB_23288| Best HMM Match : MMR_HSR1 (HMM E-Value=8.3e-06)
          Length = 210

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/55 (81%), Positives = 50/55 (90%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHG 673
           V+ KKRR+TL+EC ND+NSMID+AK ADLVLLL DASFGFEME FEFLNICQVHG
Sbjct: 119 VSGKKRRLTLLECANDINSMIDVAKVADLVLLLIDASFGFEMEVFEFLNICQVHG 173



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 41/85 (48%), Positives = 57/85 (67%)
 Frame = +3

Query: 255 SARQRNPKAFAIQNAVRAERQFRRREDVISKKQHIPQVDKTPLEXXXXXXXXXXXXXXGK 434
           S   RNPKAFA+Q+ V+A R FRR +DV +KK HIP VD+TPLE              GK
Sbjct: 34  SIAHRNPKAFAVQSVVKAARNFRRTQDVQTKKHHIPVVDRTPLEPPPVVVAVVGPPKVGK 93

Query: 435 TTLINNLIKSFIKTNVTNTDGPITM 509
           TTLIN+L+K+F + ++++  GP+T+
Sbjct: 94  TTLINSLLKNFTRQHLSDIQGPVTL 118


>SB_20000| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 476 KCNQ--HRRSHYYVTSKK--RRITLIECNNDVNSMIDIAKC 586
           KCN+  HR+      +KK  R+ T+++CN   +    +AKC
Sbjct: 50  KCNRKTHRKYTVVKCNKKTHRKYTVVKCNRKTHRKYTVAKC 90


>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 247 IGLF-YSCSSSSRLYAQRVLHDAIFSY 170
           I LF YSC + S L   R  H+A+FSY
Sbjct: 276 ISLFDYSCKTCSDLRRHRESHNAVFSY 302


>SB_37297| Best HMM Match : SCAN (HMM E-Value=4.4)
          Length = 182

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 488 HRRSHYYVTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASF 622
           +R SH   T+ KR+      +ND+  +ID  KC  LV+L   A+F
Sbjct: 89  YRESHSTETALKRK------HNDILCVIDSGKCVILVVLDLSAAF 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,809,955
Number of Sequences: 59808
Number of extensions: 338919
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)