Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060093.seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    92   3e-19
U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    28   5.5  
U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    28   5.5  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        28   5.5  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    28   5.5  
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 42/55 (76%), Positives = 46/55 (83%)
 Frame = +2

Query: 509 VTSKKRRITLIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHG 673
           VT KKRR+  IE  ND+N MIDIAK ADLVLL+ DAS+GFEME FEFLNICQVHG
Sbjct: 49  VTGKKRRVQFIEVKNDINHMIDIAKVADLVLLMVDASYGFEMETFEFLNICQVHG 103



 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 366 VDKTPLEXXXXXXXXXXXXXXGKTTLINNLIKSFIKTNVTNTDGPITM 509
           +D+ P+E              GKTTL+  L+K +++      +GP+T+
Sbjct: 1   MDRKPIETPPIIVAIVGPSKVGKTTLLRGLVKYYLRDGFGEINGPVTI 48


>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 536 LIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHGNAQ 682
           L+ CN+D  +M+       L++    +  G E+     LNIC    NAQ
Sbjct: 354 LLSCNDDAKAMLAYTDAIKLLMKDVLSGTGSEVTKAVLLNICLEKRNAQ 402


>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 536 LIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHGNAQ 682
           L+ CN+D  +M+       L++    +  G E+     LNIC    NAQ
Sbjct: 371 LLSCNDDAKAMLAYTDAIKLLMKDVLSGTGSEVTKAVLLNICLEKRNAQ 419


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 536 LIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHGNAQ 682
           L+ CN+D  +M+       L++    +  G E+     LNIC    NAQ
Sbjct: 371 LLSCNDDAKAMLAYTDAIKLLMKDVLSGTGSEVTKAVLLNICLEKRNAQ 419


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 536 LIECNNDVNSMIDIAKCADLVLLLCDASFGFEMEXFEFLNICQVHGNAQ 682
           L+ CN+D  +M+       L++    +  G E+     LNIC    NAQ
Sbjct: 354 LLSCNDDAKAMLAYTDAIKLLMKDVLSGTGSEVTKAVLLNICLEKRNAQ 402


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 329 TPTELSFSSYSILNGESFRISLTSARLDW 243
           TP+  +FS+Y +L+G    I+    R DW
Sbjct: 261 TPSIFTFSTYYLLDGRDLDIARLFERTDW 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,976,837
Number of Sequences: 27780
Number of extensions: 263327
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)