Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060091.seq
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   135   3e-32
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   3e-05
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     43   2e-04
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              42   3e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              34   0.082
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.25 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.58 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              31   1.0  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   4.1  
SB_14717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  135 bits (326), Expect = 3e-32
 Identities = 66/85 (77%), Positives = 74/85 (87%)
 Frame = +2

Query: 254 LKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 433
           +KSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVTDGA
Sbjct: 69  IKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGA 126

Query: 434 LXVVDCVSGVCVQTETVLRQAXAER 508
           L VVDCVSGVCVQTETVLRQA AER
Sbjct: 127 LVVVDCVSGVCVQTETVLRQAIAER 151



 Score =  132 bits (320), Expect = 2e-31
 Identities = 62/69 (89%), Positives = 66/69 (95%)
 Frame = +3

Query: 51  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 230
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60

Query: 231 DEQDRCITL 257
           DEQDRCIT+
Sbjct: 61  DEQDRCITI 69



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 451 CVWXVCTN*NSTA-SGXCRALKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 624
           CV  VC    +         +KP+LFMNKMDR            YQTF RIVE++NVII
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVII 190


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +3

Query: 102  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 257
            +RN S++AHVDHGKSTL D L+   G I+ + +   +  D  + E++R IT+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITV 1991



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 365  IDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
            + + GHVDFS EV+ +L    G + +VD   GV  QT
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQT 2027


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/78 (29%), Positives = 39/78 (50%)
 Frame = +2

Query: 254 LKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 433
           +K  A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  
Sbjct: 48  IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106

Query: 434 LXVVDCVSGVCVQTETVL 487
           + V+D   GV  QTE ++
Sbjct: 107 IVVIDVAKGVEEQTEKLV 124



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 87  DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 200
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +2

Query: 392 SSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAXAE 505
           + +V+ A+R+ DGAL VVD V GV  QT  VLRQA  E
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLE 58



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +2

Query: 398 EVTAALRVTDGALXVVDCVSGVCVQTETVLRQAXAE 505
           +V+ A+R+ DGAL VVD V GV  QT  VLRQA  E
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLE 128


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = +2

Query: 335 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQA 496
           K   G  I  ID+PGH  F+S       VTD  + VV    GV  QT   +R A
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHA 124



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 111 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 212
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 19/85 (22%), Positives = 40/85 (47%)
 Frame = +3

Query: 48  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 227
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T 
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 228 KDEQDRCITLNLRPSLCSSSLKRKI 302
           +      +  NL  ++C + + R I
Sbjct: 172 R-LLKHAVQENLAITICINKIDRLI 195


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 344 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
           K  +I L+D+PGH DF   +       D A+ VVD ++G
Sbjct: 11  KNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 84  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 111 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 212
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 356 INLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAXA 502
           I  +D+PGH  F++      +VTD  + VV     V  QT+  +  A A
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQA 188


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 362 LIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
           +ID+PGH  FS+  +    + D A+ VVD + G+  QT
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQT 719


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 429 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 307
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_14717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 277 HRDGRRFKVMQRSCSSLRVSVKRVSP 200
           HR+ +RF V +  C+SL V  +R SP
Sbjct: 51  HREMQRFLVYEGYCTSLNVRKRRPSP 76


>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 141 KSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNL-RPSLCSSSLKR 296
           K+ + D+LV   GI+   R G   +TD    + +R       R SL +++LKR
Sbjct: 182 KTLIKDNLVGPKGIVVDPRTGLMFWTDKETPKIERATLAGRDRISLVTTALKR 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,443,048
Number of Sequences: 59808
Number of extensions: 358182
Number of successful extensions: 1195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)