Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060091.seq
         (626 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    28   0.28 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            28   0.28 
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.6  
AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding pr...    24   4.5  
AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...    23   6.0  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 98  EYPQHVCDRPRRSRQVNPHGLVGFQGR-YHCWRE--SRRDPFH*HA*GRTRPLHHLKSTA 268
           ++P HVC+R  R+  +N   +V   G  ++C R+  S R+    +   + +  HH K   
Sbjct: 350 QHPLHVCERFERASVINREEIVRKHGLCFNCLRKGHSARECRSTYVCQQCKRKHHSKLCK 409

Query: 269 ISMFFELE 292
           I    E+E
Sbjct: 410 IGRLSEVE 417


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 369 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLR 253
           +++L+KKP SL S W       +       N ++A+ LR
Sbjct: 156 TVRLLKKPPSLDSEWKSSTSTIQLIEQLDSNKQLAIALR 194


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 83  DGQEAEYPQHVCDRPRRSRQVNPHG 157
           D   A   QH+  RP+RS + NP G
Sbjct: 273 DENPAGAQQHLSHRPQRSTRKNPAG 297


>AY146749-1|AAO12064.1|  336|Anopheles gambiae odorant-binding
           protein AgamOBP38 protein.
          Length = 336

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 362 LIDSPGHV-DFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQ 493
           LI  P +V     E+  A+      L V D     CV+TET LRQ
Sbjct: 139 LIAHPAYVAPCGQEIRRAVSDCATMLQVEDGQLQTCVRTETFLRQ 183


>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 477 SVCTHTPDTQSTTXRAPS 424
           SV  H PDT+ T  + PS
Sbjct: 135 SVIAHNPDTKRTRVKLPS 152


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,806
Number of Sequences: 2352
Number of extensions: 11154
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)