Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060091.seq
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 136 9e-33
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 136 9e-33
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 69 4e-12
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 65 3e-11
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 65 3e-11
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 58 7e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 57 1e-08
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 55 4e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 40 0.001
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 40 0.001
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 40 0.001
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.008
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.008
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 35 0.041
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 34 0.072
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.22
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.22
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.22
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.22
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.22
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 33 0.22
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 32 0.29
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.51
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 30 1.2
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.6
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.7
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.7
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 3.6
Z82053-8|CAB61018.2| 309|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF070968-1|AAD15926.1| 309|Caenorhabditis elegans PAR-6 protein. 28 6.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 136 bits (330), Expect = 9e-33
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +3
Query: 48 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 227
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 228 KDEQDRCITL 257
KDEQ+RCIT+
Sbjct: 61 KDEQERCITI 70
Score = 134 bits (323), Expect = 6e-32
Identities = 72/93 (77%), Positives = 77/93 (82%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 LKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTA 409
+KSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTA
Sbjct: 70 IKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTA 129
Query: 410 ALRVTDGALXVVDCVSGVCVQTETVLRQAXAER 508
ALRVTDGAL VVDCVSGVCVQTETVLRQA AER
Sbjct: 130 ALRVTDGALVVVDCVSGVCVQTETVLRQAIAER 162
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 451 CVWXVCTN*NSTA-SGXCRALKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 624
CV VC + +KP+LFMNKMDR +QTFQRIVEN+NVII
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVII 201
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 136 bits (330), Expect = 9e-33
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +3
Query: 48 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 227
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 228 KDEQDRCITL 257
KDEQ+RCIT+
Sbjct: 61 KDEQERCITI 70
Score = 131 bits (316), Expect = 5e-31
Identities = 71/93 (76%), Positives = 76/93 (81%), Gaps = 8/93 (8%)
Frame = +2
Query: 254 LKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSSEVTA 409
+KSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGHVDFSSEVTA
Sbjct: 70 IKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTA 129
Query: 410 ALRVTDGALXVVDCVSGVCVQTETVLRQAXAER 508
AL VTDGAL VVDCVSGVCVQTETVLRQA AER
Sbjct: 130 ALGVTDGALVVVDCVSGVCVQTETVLRQAIAER 162
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 451 CVWXVCTN*NSTA-SGXCRALKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 624
CV VC + +KP+LFMNKMDR +QTFQRIVEN+NVII
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVII 201
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 353 LINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQ 493
LINLIDSPGHVDFS EVT+AL ++D AL ++D + G+C QTE ++RQ
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQ 130
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = +3
Query: 99 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 257
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITM 71
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 353 LINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQ 493
LINLIDSPGHVDFS EVT+AL ++D AL ++D + G+C QTE ++RQ
Sbjct: 84 LINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQ 130
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = +3
Query: 99 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 257
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITM 71
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 65.3 bits (152), Expect = 3e-11
Identities = 36/87 (41%), Positives = 51/87 (58%)
Frame = +2
Query: 305 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETV 484
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + +VD GV + TE
Sbjct: 189 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 245
Query: 485 LRQAXAERSSLFCS*TKWTVLFLSSNL 565
+R A ER ++ +K L L L
Sbjct: 246 IRHAIQERLAVTLCISKIDRLLLELKL 272
Score = 35.5 bits (78), Expect = 0.031
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 81 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITL 257
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R ++
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 258 NLRP 269
+P
Sbjct: 185 KSQP 188
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 65.3 bits (152), Expect = 3e-11
Identities = 36/87 (41%), Positives = 51/87 (58%)
Frame = +2
Query: 305 VFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETV 484
V I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG + +VD GV + TE
Sbjct: 64 VSIVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERA 120
Query: 485 LRQAXAERSSLFCS*TKWTVLFLSSNL 565
+R A ER ++ +K L L L
Sbjct: 121 IRHAIQERLAVTLCISKIDRLLLELKL 147
Score = 34.7 bits (76), Expect = 0.055
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 84 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITLN 260
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R ++
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 261 LRP 269
+P
Sbjct: 61 SQP 63
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 57.6 bits (133), Expect = 7e-09
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +2
Query: 344 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQA 496
KG INLID+PGHVDF EV +RV DG + V+D +GV QT TV RQ+
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQS 138
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 102 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITL 257
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT+
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITV 78
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +2
Query: 347 GFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQAXAERSSLFC 523
G IN+ID+PGHVDF+ EV ALRV DGA+ V+ V GV QT TV RQ C
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFIC 169
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 102 IRNMSVIAHVDHGKSTLTDSLVSKAGII 185
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2
Query: 344 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
+G+L+NLID+PGHVDFS+EV+ +L V DG L +V GV QT
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQT 143
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 102 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITL 257
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITV 90
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 108 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 260
N+ I HVDHGK+TLT ++ GA+ + D +E+ R IT+N
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 101
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 365 IDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
ID PGH D+ + +GA+ VV G QT
Sbjct: 117 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 153
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 108 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 260
N+ I HVDHGK+TLT ++ GA+ + D +E+ R IT+N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 365 IDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
ID PGH D+ + +GA+ VV G QT
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 154
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 108 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLN 260
N+ I HVDHGK+TLT ++ GA+ + D +E+ R IT+N
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITIN 102
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 365 IDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
ID PGH D+ + +GA+ VV G QT
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQT 154
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 108 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCSSS 287
N+ I H+DHGK+TLT ++ A+ + D K+E+ R IT+N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 288 LKR 296
L+R
Sbjct: 107 LRR 109
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 368 DSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTE 478
D PGH DF + D A+ V+ GV QT+
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTK 150
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 108 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCSSS 287
N+ I H+DHGK+TLT ++ A+ + D K+E+ R IT+N+ S
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGYESP 106
Query: 288 LKR 296
L+R
Sbjct: 107 LRR 109
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 368 DSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTE 478
D PGH DF + D A+ V+ GV QT+
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTK 150
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 338 SEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
S G + LID PGH V AA V D A+ ++D V+G+ QT
Sbjct: 68 SLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 108 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 242
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 34.3 bits (75), Expect = 0.072
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +2
Query: 347 GFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
GFLI ID+PGH FS+ T + D A+ VVD + G+ QT
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQT 590
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 84 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
+ I +ID+PGH DF + D A+ VV C +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 84 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 84 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDC 451
+ I +ID+PGH DF + D A+ VV C
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVAC 118
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 84 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
+ I +ID+PGH DF + D A+ VV C +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 84 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
+ I +ID+PGH DF + D A+ VV C +G
Sbjct: 85 YYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTG 121
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 32.7 bits (71), Expect = 0.22
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +3
Query: 33 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 209
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 210 RFTDTRKDEQDRCITLNLRPSLCSSSLKRKI*YSSQTLTSV 332
R +QD ++L L + R+ T+TS+
Sbjct: 670 TIEKQRVQQQDGGNLMDLSALLTNQVRNRESAARRPTITSI 710
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 356 INLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
I L+D+PGH DF S + D A+ VV+ +G
Sbjct: 250 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 284
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Frame = +3
Query: 96 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRFT-----DTRK 230
+++ N+ V+ HVD GKSTL L+ ++ AR G+ F D +
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 227
Query: 231 DEQDRCITLNLRPSLCSSSLKR 296
+E++R +T+++ + +S +R
Sbjct: 228 EERERGVTMDIGRTSFETSHRR 249
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 356 INLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
I L+D+PGH DF S + D A+ VV+ +G
Sbjct: 268 IVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 302
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Frame = +3
Query: 96 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII----------AGARAGETRFT-----DTRK 230
+++ N+ V+ HVD GKSTL L+ ++ AR G+ F D +
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 245
Query: 231 DEQDRCITLNLRPSLCSSSLKR 296
+E++R +T+++ + +S +R
Sbjct: 246 EERERGVTMDIGRTSFETSHRR 267
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 114 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITLNLRPSLCSSSLK 293
+++ D GK+TL ++L S AG G A +F TR+ C +N R SS
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRRRFNKFCSHINYRNQYPSSLSV 110
Query: 294 RKI*Y 308
R + Y
Sbjct: 111 RSLLY 115
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 87 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 212
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 344 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQTETVLRQA 496
KG + +D+PGH F+S + D + VV GV QT ++ A
Sbjct: 202 KGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQSIKFA 252
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = -3
Query: 486 STVSVCTHTPDTQSTTXRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 307
++ + T +T STT P +T + + +E T S+ P L RW V
Sbjct: 697 ASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERWKAIVNK 756
Query: 306 TK 301
K
Sbjct: 757 FK 758
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 456 DTQSTTXRAPSVTRSAAVTSEEKSTCPGESIK 361
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 135 DRRGRSQTCCGYSASCPSSHG 73
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 135 DRRGRSQTCCGYSASCPSSHG 73
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 50 GEFHGRRDPWDDGQEAEYPQHVCDR 124
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 50 GEFHGRRDPWDDGQEAEYPQHVCDR 124
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z82053-8|CAB61018.2| 309|Caenorhabditis elegans Hypothetical
protein T26E3.3a protein.
Length = 309
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 245 LHHLKSTAISMFFELEEKDLVFITNPDQREKS 340
LHHL+S ++ + DL+ ITN D KS
Sbjct: 50 LHHLESVQFTLCYNSTGGDLLPITNDDNLRKS 81
>AF070968-1|AAD15926.1| 309|Caenorhabditis elegans PAR-6 protein.
Length = 309
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 245 LHHLKSTAISMFFELEEKDLVFITNPDQREKS 340
LHHL+S ++ + DL+ ITN D KS
Sbjct: 50 LHHLESVQFTLCYNSTGGDLLPITNDDNLRKS 81
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 108 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 242
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,448,942
Number of Sequences: 27780
Number of extensions: 262801
Number of successful extensions: 875
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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