Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060091.seq
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    33   0.003
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    33   0.003
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    30   0.021
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    27   0.11 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    27   0.11 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.46 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 84  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVV 445
           + + +ID+PGH DF   +       D A+ +V
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 116


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 84  MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 179
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32



 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
           + + +ID+PGH DF   +       D A+ +V   +G
Sbjct: 85  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 0.021
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 341 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSGVCVQT 475
           E G  +  +D+PGH  F S       +TD  + VV    GV  QT
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQT 234



 Score = 29.5 bits (63), Expect = 0.028
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 111 MSVIAHVDHGKSTLTDSL 164
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
           + + +ID+PGH DF   +       D A+ +V   +G
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 48


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 350 FLINLIDSPGHVDFSSEVTAALRVTDGALXVVDCVSG 460
           + + +ID+PGH DF   +       D A+ +V   +G
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 64


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 108 NMSVIAHVDHGKSTLTDSL 164
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 89  VHHPTDLVYREIHH 48
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -3

Query: 513 LERSAXA*RSTVSVCTHTPDTQSTTXRAPSVTRSAAVTSEEKSTCP 376
           +ER   A  S+     H P   +TT    + T +   T+   +T P
Sbjct: 633 MERERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTP 678


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 269 ISMFFELEEKDLVFITNPDQREKSEKGFLI 358
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 269 ISMFFELEEKDLVFITNPDQREKSEKGFLI 358
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -3

Query: 561  LELKKSTVHFVHEQNRLERSAXA*RSTVSVCTHTPDTQSTTXRAP 427
            +E +K+    +  Q R++ +     +TVS+   T    + T R+P
Sbjct: 872  IEKRKTLRASIAAQRRIQSNGLNDPTTVSLAVDTVARSNVTPRSP 916


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,261
Number of Sequences: 438
Number of extensions: 3404
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)