Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060090.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    69   5e-14
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    31   0.012

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 68.5 bits (160), Expect = 5e-14
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           F + S V+   ++GG     Q   +  G  I++ATPGRL DF+ +G  +     Y VLDE
Sbjct: 258 FAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDE 317

Query: 443 ADRMLDMGFEPQIRKII 493
           ADRMLDMGF   + +++
Sbjct: 318 ADRMLDMGFLGDVEEML 334



 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +1

Query: 502 TPNRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 603
           T  RQTLM+SAT+P+EV++LA  +L +YI I +G
Sbjct: 342 TGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVG 375



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELA 236
           QTGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA
Sbjct: 203 QTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELA 248



 Score = 31.5 bits (68), Expect = 0.007
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 102
           R  + + VK  GY +PT IQ    P+ +SG++L+
Sbjct: 166 RPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLM 199


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 30.7 bits (66), Expect = 0.012
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 510 QTDFDVVSYLAQRSEETC*GLLGRLHSDQYRIITTFRKSQHSSIVDIC-QEHEK 668
           +T F V + + +R       +L +L+ ++YR +    K     IVDIC + H+K
Sbjct: 469 ETQFVVANIILRRRFALINSILRKLYKNKYRKLIVDGKKSEEQIVDICIRSHDK 522


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,535
Number of Sequences: 336
Number of extensions: 4057
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)