Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060090.seq
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 132 3e-32
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 105 4e-24
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 95 1e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 80 3e-16
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 78 1e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 2e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 62 5e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 61 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 59 5e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 57 3e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 55 8e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 3e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 6e-08
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 51 1e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 50 4e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 49 5e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 49 7e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 49 7e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 7e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 42 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 8e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 37 0.003
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 36 0.004
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.36
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.36
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.47
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 4.4
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 26 4.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 132 bits (320), Expect = 3e-32
Identities = 64/102 (62%), Positives = 76/102 (74%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
FG +S +RNTCV+GG P+ Q RDL RGVEI IATPGRL+D L+ TNL+R TYLVLDE
Sbjct: 218 FGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDE 277
Query: 443 ADRMLDMGFEPQIRKIIEQIRPTDRL*CGQLLGPKK*RNLLR 568
ADRMLDMGFEPQIRKI++QIRP + PK+ + L R
Sbjct: 278 ADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLAR 319
Score = 78.2 bits (184), Expect = 1e-15
Identities = 34/56 (60%), Positives = 45/56 (80%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
P+RQT+M+SATWPKEV++LA DYL DYIQ+ +GSL L+A+HNI Q+ V N K+
Sbjct: 299 PDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKR 354
Score = 70.1 bits (164), Expect = 3e-13
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/33 (54%), Positives = 27/33 (81%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
V + VK +G++ PTPIQ Q WP+AMSG+++VG+
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGI 165
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 105 bits (253), Expect = 4e-24
Identities = 48/79 (60%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADR 451
+R C +GGAP ++Q DL+RG EIV+ TPGR+ID L TNL RCTYLVLDEADR
Sbjct: 520 IRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADR 579
Query: 452 MLDMGFEPQIRKIIEQIRP 508
M D+GFEPQ+ +II IRP
Sbjct: 580 MFDLGFEPQVMRIINNIRP 598
Score = 61.3 bits (142), Expect = 1e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELA 504
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
+ ++GY++PT IQAQ P SG++++GV K
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAK 463
Score = 33.9 bits (74), Expect = 0.022
Identities = 14/40 (35%), Positives = 27/40 (67%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSAN 624
P+RQT+++SAT+P+ ++ LA L ++I +G + A+
Sbjct: 598 PDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS 637
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/81 (53%), Positives = 59/81 (72%)
Frame = +2
Query: 254 SADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 433
S F + S+VR V+GGA R Q R +++G +++ ATPGRL+D +++G +L +LV
Sbjct: 275 SRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLV 334
Query: 434 LDEADRMLDMGFEPQIRKIIE 496
LDEADRMLDMGFEPQIR I+E
Sbjct: 335 LDEADRMLDMGFEPQIRHIVE 355
Score = 48.8 bits (111), Expect = 7e-07
Identities = 22/54 (40%), Positives = 40/54 (74%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
RQTLM+SAT+P++++ LA D+L DY+ +++G + S + NI Q + V++ +K+
Sbjct: 365 RQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKR 417
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 16 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 102
Q +K GY +PTP+Q PI SG++L+
Sbjct: 182 QNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Frame = +3
Query: 111 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTREL 233
QTGSGKT ++ P + + + P P+ + G P L+LAPTREL
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTREL 267
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = +2
Query: 284 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 463
R V GG EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDM
Sbjct: 355 RCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDM 414
Query: 464 GFEPQIRKIIEQI 502
GFE + KI+ +
Sbjct: 415 GFEDDVNKILSSL 427
Score = 52.0 bits (119), Expect = 8e-08
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELA 236
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELA
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELA 338
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +1
Query: 496 ANTPNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL 609
+++ RQT+M+SAT P V LA+ YL + + + IG++
Sbjct: 445 SSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
E+ + +K + YKEP+ IQ P+ + K+L+G+
Sbjct: 259 EMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGI 292
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 78.2 bits (184), Expect = 1e-15
Identities = 37/66 (56%), Positives = 46/66 (69%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 475
V+GGAPK EQAR + ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE
Sbjct: 270 VYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQ 328
Query: 476 QIRKII 493
IR II
Sbjct: 329 DIRNII 334
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
+RQT+ +SATWP+ V+ LA +L D ++I IGS +L+A+ NI Q+
Sbjct: 345 SRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQI 389
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/34 (47%), Positives = 27/34 (79%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
++++G+K YKEPTPIQA WP ++G+++VG+
Sbjct: 177 KLREGLKN--YKEPTPIQAATWPYLLAGRDVVGI 208
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELA 249
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/75 (45%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGF 469
V GGA +R +A L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++GF
Sbjct: 195 VIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGF 253
Query: 470 EPQIRKIIEQIRPTD 514
E ++R+I+ +I P++
Sbjct: 254 EDEMRQIM-KILPSE 267
Score = 35.1 bits (77), Expect = 0.010
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Frame = +3
Query: 111 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTLA+++P I ++ P R G G ++++PTRELA
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELA 174
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 62.5 bits (145), Expect = 5e-11
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFE 472
V GG K+ + + +GV I+I TPGRL D LE ++ + ++VLDE DR++DMGFE
Sbjct: 253 VIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFE 312
Query: 473 PQIRKIIEQI 502
+ KI+ +
Sbjct: 313 ETLTKILSYL 322
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTREL 233
QTGSGKTLAY+LP + + P R G A+++APTREL
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTREL 228
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 61.3 bits (142), Expect = 1e-10
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRM 454
VR+ + GG QA L + +++ TPGRL+D LE KG + L+ YL++DEADR+
Sbjct: 143 VRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFS-LKNLKYLIMDEADRL 201
Query: 455 LDMGFEPQIRKIIEQIRPTDR 517
LDM F P I KI+ +I P +R
Sbjct: 202 LDMDFGPIIDKIL-KIIPHER 221
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELA 236
QTGSGKT A+ LP I + NN P A+VLAPTRELA
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELA 127
Score = 32.3 bits (70), Expect = 0.067
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
E+ + + +G+K PTPIQ + P+ ++ ++++G+
Sbjct: 56 ELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGL 89
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 59.3 bits (137), Expect = 5e-10
Identities = 31/86 (36%), Positives = 46/86 (53%)
Frame = +2
Query: 260 DFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 439
DF + +R+ + GG EQ L +IV+ATPGR + + L Y+V D
Sbjct: 161 DFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFD 220
Query: 440 EADRMLDMGFEPQIRKIIEQIRPTDR 517
EADR+ +MGF Q+ +I+ + PT R
Sbjct: 221 EADRLFEMGFAAQLTEILHAL-PTSR 245
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT A+++P I H+ + AL+L+P RELA
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELA 152
Score = 31.5 bits (68), Expect = 0.12
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 34 GYKEPTPIQAQGWPIAMSGKNLVGVLK 114
G+K PTPIQ + P+ + G+++VG+ +
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMAR 114
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +2
Query: 287 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 466
+ C+ GG R+ L+ GV +V+ TPGR+ D +++ VLDEAD ML G
Sbjct: 119 HACI-GGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRG 177
Query: 467 FEPQIRKIIEQIRPT 511
F+ QI I + + PT
Sbjct: 178 FKDQIYDIFQLLPPT 192
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 33 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 212
G +R A + ++ + Q+G+GKT + + + I+ +++ AL+
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALI 92
Query: 213 LAPTRELA 236
LAPTRELA
Sbjct: 93 LAPTRELA 100
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 55.2 bits (127), Expect = 8e-09
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +2
Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GG R+ L V IV+ TPGR++D KG + CT V+DEAD++L F P I
Sbjct: 148 GGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPII 207
Query: 482 RKII 493
+++
Sbjct: 208 EQLL 211
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ E+ G+ G++ P+PIQ + PIA+SG++++ K K
Sbjct: 52 KRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 31.9 bits (69), Expect = 0.089
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 33 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 212
G +R + + ++ R + G+GKT A+++P++ ++ + + L+
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLI 117
Query: 213 LAPTRELA 236
L PTRELA
Sbjct: 118 LVPTRELA 125
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
NRQ ++SAT+P VK + +L +IN+
Sbjct: 217 NRQISLYSATFPLIVKNFMDKHLNKPYEINL 247
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 53.2 bits (122), Expect = 3e-08
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGF 469
C+ GG + Q ++L + +IVIATPGR ID + ++ +V+DEADRML+ GF
Sbjct: 364 CI-GGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGF 422
Query: 470 EPQIRKIIE 496
++ +II+
Sbjct: 423 ADELNEIIQ 431
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
TGSGKT A+I+P + + +P ++ L+L PTRELA
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELA 343
Score = 32.3 bits (70), Expect = 0.067
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 105
+ +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.4 bits (120), Expect = 6e-08
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRM 454
+R + GG K + + RG ++IATPGRL D L+ T +LDEADR+
Sbjct: 141 IRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRL 200
Query: 455 LDMGFEPQIRKIIEQIRPT-DRL*CGQLLGPKK*RNLLR 568
+DMGF I I E + T R C P K N+ R
Sbjct: 201 MDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFR 239
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+ +TG+GKTLA++L A + P +++L+PTRELA
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELA 125
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +2
Query: 269 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 448
H + + C+ GG + L+ G +V TPGR+ D + + + L+LDEAD
Sbjct: 115 HMNVQCHACI-GGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEAD 173
Query: 449 RMLDMGFEPQIRKIIEQIRP 508
+L+ GF+ QI I + P
Sbjct: 174 ELLNQGFKEQIYDIYRYLPP 193
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +3
Query: 33 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 212
G + A S + ++ + Q+G+GKT + + + I+ +R AL+
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALI 94
Query: 213 LAPTRELAXXXXXXXXXXDTHLMFVTRVCL 302
L+PTRELA H+ C+
Sbjct: 95 LSPTRELAVQIQNVVLALGDHMNVQCHACI 124
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 49.6 bits (113), Expect = 4e-07
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 257 ADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL----EKGTTNLQRCT 424
A G +++ + GG Q+ DL + +V+ATPGRL D + E+ L+R
Sbjct: 96 AALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIK 155
Query: 425 YLVLDEADRMLDMGF 469
+LV+DEADR+L F
Sbjct: 156 FLVMDEADRLLSPTF 170
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT A+ LP I + P G AL+L PTRELA
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELA 88
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 49.2 bits (112), Expect = 5e-07
Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +2
Query: 347 VEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
++++++TPGRL+D + + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 261 IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTREL 233
TGSGKTL+Y++P + ++++ P +R +V+ PTREL
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTREL 217
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.8 bits (111), Expect = 7e-07
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEADRM 454
+R + GG ++Q R L + +V+ATPGRL + + T N ++ LVLDEADR+
Sbjct: 221 IRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRL 280
Query: 455 LDMGFEPQIRKIIE 496
L ++ K++E
Sbjct: 281 LQKSHFEELSKLLE 294
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELA 236
+ TGSGKTLA+ +P + H +R D ALV+APTRELA
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELA 205
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.8 bits (111), Expect = 7e-07
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +2
Query: 194 WSDCFGLGAYQRVSTTNSASSADF------GHTSYVRNTCVFGGAPKREQARDLERGVEI 355
W+ GLGA +S T + F G + GG +E+ L R + I
Sbjct: 106 WTSLDGLGALV-ISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNI 163
Query: 356 VIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
++ TPGRL+ +++ + L+LDEADR+LDMGF + I+ +
Sbjct: 164 LVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSL 213
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTLA+I+P I ++ + DG ALV++PTRELA
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELA 124
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 45.6 bits (103), Expect = 7e-06
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 338 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
E+ +VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ II Q+
Sbjct: 130 EKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQL 182
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
TGSGKTLAY+LP + + G G AL++APTRELA
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELA 85
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 102
++ V G+K+ TP+QA P+ + K+LV
Sbjct: 12 LKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 350 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 490
+IVIATP R + + G L + +LV+DEAD ML G+ ++ +
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTL 188
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELA 236
K+ + +TGSGKT AY++P + + Q I G AL+L PTRELA
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELA 101
Score = 29.1 bits (62), Expect = 0.63
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 102
+Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 25 LQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +2
Query: 317 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 493
+E+A L ++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 157 QEKAPKLREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHIL 214
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
TGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 281 VRNTCVFGGAPKR---EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 451
VR +GG + E +D + IV+ATPGRL + + + + VLDE D+
Sbjct: 149 VRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208
Query: 452 MLD 460
+L+
Sbjct: 209 LLE 211
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
D+G + + S + + + ++G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 207 -LVLAPTRELA 236
LVL TRELA
Sbjct: 122 VLVLCHTRELA 132
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 350 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
+IVI TPG ++D +++ + + VLDEAD MLD
Sbjct: 232 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
++Q+G+GKT A+ L + ++ P P A+ LAP+RELA
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELA 197
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
TG GK+L++++PA++ Q P + + LVL P L
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSL 1253
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
TG GK+L++++PA++ Q P + + LVL P L
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSL 1253
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 29.5 bits (63), Expect = 0.47
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 329 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 430
R L++G+E VI TP RL+ ++ + NLQR +++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHM 168
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 477 KSEKSLSKYAQQTDFDVVSYLAQRSE 554
KSEKSL K A++ D + Y +R E
Sbjct: 871 KSEKSLDKQAEERDKKYLLYFEEREE 896
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 462 WDLNHKSEKSLSKYAQQTDFDVVSYLAQRSEETC*GLL 575
WD++ +K LS+ Q T+F V SY +++ C LL
Sbjct: 427 WDMSIYFDKDLSECEQATNFAVQSYFV--TKQRCYDLL 462
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 33 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDG 197
G+Q D + +LAD + +S T GK + Y +P V + ++ I+ G G
Sbjct: 82 GVQGNDFLFNGKLADLNAEEAYSHLTTPVFGKDVVYDIPNHVFMEHKKFIKSGLG 136
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 235 HNKFSKFCRFWTHILCS 285
H+ FCR W I+CS
Sbjct: 373 HSHLQSFCRDWLRIVCS 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,209
Number of Sequences: 5004
Number of extensions: 66781
Number of successful extensions: 278
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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