Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060090.seq
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 130 1e-30
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 3e-20
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 8e-20
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 6e-19
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 5e-17
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 77 1e-14
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 65 4e-11
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 58 5e-09
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 57 1e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 57 2e-08
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 56 2e-08
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 54 8e-08
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 48 7e-06
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 2e-04
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 43 2e-04
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 43 3e-04
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 43 3e-04
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 42 6e-04
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 41 0.001
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 38 0.010
SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 34 0.093
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 33 0.16
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 33 0.22
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 32 0.38
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 31 0.66
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.5
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 29 4.6
SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73) 28 6.1
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 130 bits (314), Expect = 1e-30
Identities = 60/76 (78%), Positives = 67/76 (88%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
+R+TC++GGAPK Q R+LERGVEI IATPGRLID LE TNL+RCTYLVLDEADRMLD
Sbjct: 161 LRSTCIYGGAPKGPQIRELERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLD 220
Query: 461 MGFEPQIRKIIEQIRP 508
MGFEPQIR II+QIRP
Sbjct: 221 MGFEPQIRTIIDQIRP 236
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/58 (58%), Positives = 45/58 (77%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKKIN 678
P+RQTLMWSATWPKEV+ LA D+L DY+ I +GSL L+ANH ILQ+ ++ +K+ N
Sbjct: 236 PDRQTLMWSATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHN 293
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +3
Query: 138 YILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+ILP IVHIN+QP ++ GDGPI LVL PTRELA
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELA 145
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 95.9 bits (228), Expect = 3e-20
Identities = 43/91 (47%), Positives = 60/91 (65%)
Frame = +2
Query: 227 RVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT 406
R+ + DF + S R V+GGA Q R+L+R +++ATPGRL+D +++G
Sbjct: 936 RIYMEGPPAPPDFSYRSLCRPCVVYGGADIGSQLRELDRNCHLLVATPGRLVDMMDRGRV 995
Query: 407 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 499
L +LVLDEADRMLDMGFEPQIR+I++Q
Sbjct: 996 GLDSIRFLVLDEADRMLDMGFEPQIRRIVDQ 1026
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
RQTLM+SAT+PKE++ LA D+L +YI + +G + S + NI Q ++V K+
Sbjct: 1035 RQTLMFSATFPKEIQMLARDFLENYIFLAVGKVG-STSENITQKVVWVDEFDKR 1087
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPP 179
QTGSGKT A+++P + I + P
Sbjct: 920 QTGSGKTAAFLIPILSRIYMEGP 942
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 94.3 bits (224), Expect = 8e-20
Identities = 45/73 (61%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADR 451
+R CV+GG EQ +L+RG EI++ TPGR+ID L TN QRCTYLVLDEADR
Sbjct: 173 LRCVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADR 232
Query: 452 MLDMGFEPQIRKI 490
M DMGFEPQI KI
Sbjct: 233 MFDMGFEPQITKI 245
Score = 37.1 bits (82), Expect = 0.013
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVL 111
+K Y++PTPIQAQ P+ MSG++++ ++
Sbjct: 120 LKKNSYEKPTPIQAQAIPVIMSGRDMIAIV 149
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 603
P+RQT+M+SAT+P++++ LA L I+I +G
Sbjct: 259 PDRQTVMFSATFPRQMEALARKILDKPIEIQVG 291
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 126 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
K +Y P + P I G IA+V+ PTRELA
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELA 157
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 91.5 bits (217), Expect = 6e-19
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
F H + +R +GG Q R L+ G +++ TPGRL DF+EKG +L+ +L+LDE
Sbjct: 811 FAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDE 870
Query: 443 ADRMLDMGFEPQIRKIIEQIRPTDR 517
ADRMLDMGFEP IR+I+E + D+
Sbjct: 871 ADRMLDMGFEPAIRRIVESMGMPDK 895
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIG 603
RQTLM+SAT+P+E+++LA D+L DY+ + +G
Sbjct: 898 RQTLMFSATFPEEIQRLAGDFLNDYLFLTVG 928
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELA 236
QTGSGKT A++LP + + N P A+ +APTRELA
Sbjct: 756 QTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELA 801
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLV 102
V+ YK+PTP+Q PI ++G++++
Sbjct: 726 VRKAQYKKPTPVQKYSIPIVIAGRDVM 752
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 85.0 bits (201), Expect = 5e-17
Identities = 40/69 (57%), Positives = 47/69 (68%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
FG + VFGG K EQ++ L+ G EIV+ATPGRLID ++ TNL R TYLV DE
Sbjct: 613 FGKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDE 672
Query: 443 ADRMLDMGF 469
ADRM DMGF
Sbjct: 673 ADRMFDMGF 681
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/41 (63%), Positives = 34/41 (82%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL
Sbjct: 562 KTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTREL 602
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK----RVPAKRWP 138
++ ++ + Y +PT IQ Q PIA+SG++++G+ K + A WP
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWP 574
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 77.0 bits (181), Expect = 1e-14
Identities = 29/75 (38%), Positives = 49/75 (65%)
Frame = +2
Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 472
C++GG P Q + G+++++ TPGR++DF+ +GT +L + ++VLDE DRMLDMGF
Sbjct: 178 CIYGGMPYEPQENAINSGLDVLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFA 237
Query: 473 PQIRKIIEQIRPTDR 517
+ +++ DR
Sbjct: 238 ESVEEVLAASYAEDR 252
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 200
+D G+ +S Y ++ + +TG+GKTL++ LP + + + + +RG P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 201 IALVLAPTRELA 236
LV+APTRELA
Sbjct: 149 KVLVMAPTRELA 160
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 72.1 bits (169), Expect = 4e-13
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 293 CV-FGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 469
CV +GG QA LERG ++ TPGRL DF+ + L +L+LDEADRMLD+GF
Sbjct: 584 CVCYGGVSVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGF 643
Query: 470 EPQIRKIIEQIRPT 511
P I K+IE+ T
Sbjct: 644 GPDIHKLIEESNMT 657
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/63 (39%), Positives = 30/63 (47%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAXXXXXXXXXXDTHLMFVT 290
QTGSGKT AY+LP + + Q P+AL +APTRELA H
Sbjct: 524 QTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKV 583
Query: 291 RVC 299
VC
Sbjct: 584 CVC 586
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
+RQTLM+SAT+P E++ LA +L DY+ + +G + N +I Q I V +K+
Sbjct: 661 SRQTLMFSATFPDEIQHLAGSFLKPDYLFLAVGRVG-GTNLDITQHVITVNGSEKR 715
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 102
++ + GY+ PTP+Q PI M+G++L+
Sbjct: 489 QLMANISRAGYRRPTPVQKAALPIVMAGRDLM 520
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 472
+ GG ++ +A L++GV ++IATPGRL+D L+ L + LV+DEADR+L++GFE
Sbjct: 678 IMGGVNRKAEAERLQKGVNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFE 737
Query: 473 PQIRKIIEQIRPTDR 517
++R+II +I P+ R
Sbjct: 738 EEMRQII-RILPSKR 751
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 203
KD G +A ++ +TGSGKTLA+++P +V + + + +G
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTG 646
Query: 204 ALVLAPTRELA 236
++++PTREL+
Sbjct: 647 VIIISPTRELS 657
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 65.3 bits (152), Expect = 4e-11
Identities = 36/82 (43%), Positives = 46/82 (56%)
Frame = +2
Query: 272 TSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 451
T+ + V GG P Q L G ++V+ATPGRL+D L + TYLV+DE DR
Sbjct: 193 TARYKAVAVCGGVPVSTQTIALREGADVVVATPGRLLD--------LYKITYLVMDEPDR 244
Query: 452 MLDMGFEPQIRKIIEQIRPTDR 517
ML MG E Q+RKI+ T R
Sbjct: 245 MLGMGMEEQLRKIVGLATGTSR 266
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
+TGSGKTLAY LP + + + P GD P+AL+L PTREL
Sbjct: 117 ETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTREL 157
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIG 603
RQTL+WSAT P+ +++LA + + I I +G
Sbjct: 268 RQTLLWSATLPESLERLARSAVLNPITIQVG 298
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 37 YKEPTPIQAQGWPIAMSGKNLVGVLKRVPAKRWPTSCQPLC 159
++ PTPIQ Q MSG++++G+ + K S PLC
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLC 131
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/82 (39%), Positives = 44/82 (53%)
Frame = +2
Query: 266 GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 445
G +V+ GG RE LE GV +V+ TPGR+ D + +G N + VLDEA
Sbjct: 183 GDYMHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEA 242
Query: 446 DRMLDMGFEPQIRKIIEQIRPT 511
D ML GF+ QI + ++ PT
Sbjct: 243 DEMLSRGFKDQIYDVFTRL-PT 263
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELA 236
+ Q+G+GKT + + + I+ + G D ALVLAPTRELA
Sbjct: 128 QAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELA 172
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRML 457
++ + GG +QA L +VIATPGRL D ++ T NL++ +LVLDEADR+L
Sbjct: 104 LKEAVIVGGLDMMKQALSLANKPHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLL 163
Query: 458 DMGFEPQIRKIIEQI 502
D F ++ I + +
Sbjct: 164 DPSFGDDLKVIFDAV 178
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT A+ LP + + + P G A+VL PTRELA
Sbjct: 52 KTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELA 88
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 57.2 bits (132), Expect = 1e-08
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 10/118 (8%)
Frame = +2
Query: 194 WSDCFGLGAYQRVSTTNSASSADF------GHTSYVRNTCVFGGAP-KREQARDLERGVE 352
W+ GLGA +S T + F G+ + + GG K EQ R ++
Sbjct: 117 WTSMDGLGALV-ISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRIMK--TN 173
Query: 353 IVIATPGRLIDFLEKGTTNLQRCT---YLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
IV+ TPGRL+ +++ T N CT LVLDEADR+LDMGF P + IIE + P++R
Sbjct: 174 IVVCTPGRLLQHMDE-TPNFD-CTSLQILVLDEADRILDMGFAPTLNAIIENL-PSER 228
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTLA+++P I + Q DG ALV++PTRELA
Sbjct: 95 KTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELA 135
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 19 GVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
G+ G+ PT IQ QG P+A+SG++++G K
Sbjct: 64 GLMKAGFVTPTDIQKQGIPVALSGRDVLGAAK 95
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 499 NTPN-RQTLMWSATWPKEVKKLAEDYLGDYI 588
N P+ RQTL++SAT + VK LA L Y+
Sbjct: 223 NLPSERQTLLYSATQTRSVKDLARLSLQSYV 253
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 56.8 bits (131), Expect = 2e-08
Identities = 21/55 (38%), Positives = 39/55 (70%)
Frame = +2
Query: 338 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
E GV++++ATPGR+++ + + +L V+DE D ML +GFE Q+++I+E++
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERL 307
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAKRWPTS 144
+ + + GY PTPIQ Q P+ +SG++++ K P+S
Sbjct: 207 LSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
RQT+++SAT P ++ +A L + I+ GS L + QL ++V+ KK
Sbjct: 311 RQTMLFSATIPPSIEAMASRLLNAPVFISAGSPSLPTK-AVKQLILWVEEKSKK 363
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRM 454
V+ + GG QA L + I+IATPGRLID LE KG +L+ YLV+DEADR+
Sbjct: 61 VKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLIDHLENTKG-FSLRTLKYLVMDEADRI 119
Query: 455 LDMGFEPQ 478
L+M FE +
Sbjct: 120 LNMDFEKE 127
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT A+ LP + + + P AL+L PTRELA
Sbjct: 9 ETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELA 45
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/57 (38%), Positives = 41/57 (71%)
Frame = +2
Query: 347 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ + +II+ + P +R
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHL-PENR 228
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ E+ G+ G+ +P+PIQ + P+A++G++++ K K
Sbjct: 55 KRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
+ G + + + ++ R + G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 207 LVLAPTRELA 236
LVL PTRELA
Sbjct: 119 LVLVPTRELA 128
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
NRQ L++SAT+P V+ E +L +IN+ + H + Q FV+ +K
Sbjct: 227 NRQILLFSATFPISVRDFKEKHLRKPYEINL--MDELTLHGVTQYYAFVEEKQK 278
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/57 (38%), Positives = 41/57 (71%)
Frame = +2
Query: 347 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
V +++ATPGR++D ++K ++ +C LV+DEAD++L M F+ + +II+ + P +R
Sbjct: 173 VHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHL-PENR 228
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ E+ G+ G+ +P+PIQ + P+A++G++++ K K
Sbjct: 55 KRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
+ G + + + ++ R + G+GKT AY++P + + + A
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----A 118
Query: 207 LVLAPTRELA 236
LVL PTRELA
Sbjct: 119 LVLVPTRELA 128
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
NRQ L++SAT+P V+ E +L +IN+ + H + Q FV+ +K
Sbjct: 227 NRQILLFSATFPISVRDFKEKHLRKPYEINL--MDELTLHGVTQYYAFVEEKQK 278
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = +2
Query: 269 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 448
H + R+ + GG ++ DLE V++++ATPG L+ + +K T+LV+DEAD
Sbjct: 480 HHARFRSVGLIGGRKQKWMRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEAD 539
Query: 449 RMLDMGFEPQIRKIIEQIRPTD 514
M D F+ +I+ I ++
Sbjct: 540 TMFDASFKSLTMEILHTINSSE 561
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELA 236
QTGSGKTLAY+ P +VH + R G P A ++ P RELA
Sbjct: 423 QTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELA 468
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +2
Query: 287 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 466
+ C+ GG E R L+ G IV TPGR+ D + + + LVLDEAD ML+ G
Sbjct: 97 HACI-GGTNIGEDIRKLDYGQHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKG 155
Query: 467 FEPQIRKIIEQIRPTDRL 520
F+ QI + + P ++
Sbjct: 156 FKEQIYDVYRYLPPATQV 173
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +3
Query: 33 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 212
G ++ A + ++ + Q+G+GKT + + + I+ Q +R P ALV
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQALV 70
Query: 213 LAPTRELA 236
L+PTRELA
Sbjct: 71 LSPTRELA 78
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELA 236
+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELA
Sbjct: 146 ETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELA 191
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +2
Query: 305 GAPKREQARDLERGVEIVIATPGR-LIDFLEKGTTNLQRC----TYLVLDEADRMLDMGF 469
G PK E+ D ++G +I P R L +E+ R T V+ ADRM+DMGF
Sbjct: 165 GLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGADRMIDMGF 224
Query: 470 EPQIRKIIEQI 502
EP+++KI+E +
Sbjct: 225 EPEVQKILEHL 235
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
V +GYK+PTPIQ Q PI + ++++GV
Sbjct: 116 VDKLGYKDPTPIQRQAIPIGLQNRDIIGV 144
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYL 576
RQT+M++AT P +V++LA++YL
Sbjct: 263 RQTVMFTATMPPQVERLAKNYL 284
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/38 (44%), Positives = 29/38 (76%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLS 618
P+RQT+M SATWP V+++A+ Y+ D +++ +G L L+
Sbjct: 16 PDRQTVMTSATWPPGVQRMADQYMTDPVRVFVGCLDLN 53
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 461 MGFEPQIRKIIEQIRP 508
MGFEP+I+KI+ IRP
Sbjct: 1 MGFEPEIKKILLDIRP 16
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +2
Query: 407 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDRL*CGQLLGPKK*RNLLR 568
N+ YLVLDEADRM+DMGFE +R I + + PKK +N +
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAK 66
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVK 657
RQTL++SAT PK+++ A+ L + +N+G +A+ +++Q+ IF +
Sbjct: 48 RQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-AASLDVIQVLIFAE 95
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +2
Query: 407 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDRL*CGQLLGPKK*RNLLR 568
N+ YLVLDEADRM+DMGFE +R I + + PKK +N +
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAK 66
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVK 657
RQTL++SAT PK+++ A+ L + +N+G +A+ +++Q+ IF +
Sbjct: 48 RQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-AASLDVIQVLIFAE 95
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 347 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
V+IV TPG+L DF+ +L + + +LDEAD +L G I KI +I
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 269 HTSYVRNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 445
+ S ++ FGG ++ + L+ IV+ TPGR++ + T NL+ + +LDE
Sbjct: 141 YMSNIKIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDEC 200
Query: 446 DRMLD 460
D+ML+
Sbjct: 201 DKMLE 205
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 269 HTSYVRNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 445
+ S ++ FGG ++ + L+ IV+ TPGR++ + T NL+ + +LDE
Sbjct: 141 YMSNIKIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDEC 200
Query: 446 DRMLD 460
D+ML+
Sbjct: 201 DKMLE 205
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 475
VF G E+ + + I + TPGR+ +E+ + +LDEAD++LD F+
Sbjct: 115 VFIGGISLEEDKKALKSCHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQ 174
Query: 476 QIRKIIEQI 502
QI I +
Sbjct: 175 QINWIFSAL 183
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 475
+FGG + ++ L G E+++ATP + L++ T+L R ++V D+AD ML F
Sbjct: 298 IFGGGAEEDRIVPLINGCEVLVATPPCFLRMLKRCYTSLDRLCHVVFDDAD-MLAEYFTA 356
Query: 476 QIR 484
+I+
Sbjct: 357 EIK 359
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 117 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVL 215
GSGK LAY+LP I I + +GP+ L+L
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 347 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
V +V+ + EK +N+Q YLV+DEADRM++ G ++ I+E I
Sbjct: 316 VVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVW-KEFSWRTQTGSGKTLAYILPAIVHIN-------NQPPI 182
D G + S + + ++ ++ +TGSGKTLA+ +P I HI Q P
Sbjct: 147 DQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPS 206
Query: 183 -------RRGDGPIALVLAPTRELA 236
+G +AL++APTRELA
Sbjct: 207 DKESDLESQGYPLLALIMAPTRELA 231
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN 409
V+ + GG +Q R L++ EIV+ATPGRL + + + T+
Sbjct: 247 VKVAAIVGGMAAPKQQRLLKQRPEIVVATPGRLWELISQVFTH 289
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 287 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG 400
+ C+ GG RE LE GV +V+ TPGR+ D + +G
Sbjct: 6 HACI-GGTNVREDRMKLEEGVHVVVGTPGRVFDMINRG 42
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +2
Query: 428 LVLDEADRMLDMGFEPQIRKIIEQI 502
LVLDEADRMLDMGF IR+++ ++
Sbjct: 7 LVLDEADRMLDMGFIHDIRRVLTKL 31
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 29/43 (67%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQ 639
RQ L++SAT+ ++K LAE L + ++I + + + +A+ +LQ
Sbjct: 35 RQNLLFSATFSDDIKALAEKLLHNPLEIEV-ARRNTASDQVLQ 76
>SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
E+ +N+Q YLV+DEADRM++ G ++ I+E I
Sbjct: 2 EEHVSNVQLLRYLVIDEADRMVEQGHYEELSSILELI 38
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 34.3 bits (75), Expect = 0.093
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 18 RCKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDG 197
+ K G+ + L + K +++TG+GK+L ++LP++ Q P RG G
Sbjct: 174 KLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYG 227
Query: 198 PIALVLAPTRELA 236
I ++ PTRELA
Sbjct: 228 TI--IVVPTRELA 238
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 353 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 457
IVI TP RL + +++ QR +V+DE D+ L
Sbjct: 280 IVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +2
Query: 350 EIVIATPGRLIDFL--EKGTTNLQRCTYLVLDEADRMLDM---GFEPQIRKIIEQIRPTD 514
+I++ TP RL+ L E L +L+LDEAD++ + GF QI I + D
Sbjct: 258 DILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPD 317
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 332 DLERGVEIVIATPGRLIDFL 391
+L+RG EI++ TPGR+ID L
Sbjct: 3 ELKRGAEIIVCTPGRMIDML 22
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 33.1 bits (72), Expect = 0.22
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = +2
Query: 221 YQRVSTTNSASSADFGHTSYVR-NTCVFGGA-PKREQARDLERGVEIVIATPGRLIDFLE 394
Y+ T + A H +++ N V G P+ ++ D I+I TPG L+D++
Sbjct: 183 YELARQTGKVAEAMGKHCPHIKINYAVRGNQFPRGQKCTD-----HIIIGTPGTLLDWIR 237
Query: 395 KGTT-NLQRCTYLVLDEADRMLDM-GFEPQIRKI 490
K ++ + VLDEAD M+ + G + Q +I
Sbjct: 238 KSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRI 271
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
++Q+G+GKT A++L + ++ P P + L+PT ELA
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELA 186
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT A+++P + G AL+L+PTRELA
Sbjct: 326 RTGSGKTAAFLIPMFEKLQTH---TAKVGIRALILSPTRELA 364
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 344 GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 451
G + V+ATPGR + + + L Y+V DEADR
Sbjct: 387 GGDSVVATPGRFLHVVMEMELKLSSVEYVVFDEADR 422
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
TG+GKT A++LP + + +P + LV+ PTRELA
Sbjct: 56 TGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELA 94
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 16 QGVKTMGYKEPTPIQAQGWPIAMSGKNL 99
+ V +G+ PTPIQA P+A+ GK++
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDV 50
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 428 LVLDEADRMLDMGFEPQIRKIIEQIRP 508
LVLDEAD ML+ GF+ QI + + P
Sbjct: 39 LVLDEADEMLNKGFKEQIYDVYRYLPP 65
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 410 LQRCTYLVLDEADRMLDMGFEPQIRKII 493
LQRC LVLDEA +D + Q++++I
Sbjct: 1219 LQRCKVLVLDEATANVDYRTDRQVQQLI 1246
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 410 LQRCTYLVLDEADRMLDMGFEPQIRKII 493
LQRC LVLDEA +D + Q++++I
Sbjct: 984 LQRCKVLVLDEATANVDYRTDRQVQQLI 1011
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLV 102
V+ YK+PTP+Q PI ++G++++
Sbjct: 149 VRKAQYKKPTPVQKYSIPIVIAGRDVM 175
>SB_24613| Best HMM Match : Ctr (HMM E-Value=0.73)
Length = 895
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 374 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 505
R + LEKG + LDEAD+M+D F R+++E I+
Sbjct: 372 RQLRHLEKGKETCDQ----KLDEADKMIDAYFREMQRRLMEDIK 411
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,176,816
Number of Sequences: 59808
Number of extensions: 524350
Number of successful extensions: 1172
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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