Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060090.seq
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       79   4e-17
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 79.0 bits (186), Expect = 4e-17
 Identities = 36/78 (46%), Positives = 47/78 (60%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           F   S ++    +GG     Q   L  G  I++ATPGRL+DF+EKG        +LVLDE
Sbjct: 296 FSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDE 355

Query: 443 ADRMLDMGFEPQIRKIIE 496
           ADRMLDMGF P I K+++
Sbjct: 356 ADRMLDMGFLPSIEKMVD 373



 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 102
           R+ V   +K  GYK+PTP+Q    PI M+G++L+
Sbjct: 204 RNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLM 237



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIG 603
           RQTLM+SAT+P EV+ LA  +L +Y+ + +G
Sbjct: 383 RQTLMFSATFPDEVQHLARRFLNNYLFLAVG 413



 Score = 25.0 bits (52), Expect = 0.67
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAI 155
           QTGSGKT A+ +P I
Sbjct: 241 QTGSGKTAAFAVPII 255


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 195 HHLSE*AVGCLCAQWLARCRPTFCRNPFEYA 103
           +++SE  V  L    +   +PT   N FEYA
Sbjct: 180 NYMSELTVDILLETAMGVSKPTRDHNAFEYA 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,116
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)