Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060090.seq
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 133 1e-31
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 133 1e-31
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 130 1e-30
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 117 8e-27
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 117 8e-27
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 117 8e-27
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 111 4e-25
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 109 2e-24
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 103 1e-22
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 100 8e-22
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 99 3e-21
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 99 3e-21
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 98 4e-21
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 91 5e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 91 6e-19
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 87 1e-17
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 79 4e-15
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 77 8e-15
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 77 8e-15
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 77 1e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 75 3e-14
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 72 4e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 66 2e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 63 2e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 63 2e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 62 3e-10
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 62 3e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 62 3e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 61 8e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 60 1e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 60 1e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 60 1e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 60 1e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 59 2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 3e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 58 4e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 58 7e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 57 9e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 57 9e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 56 3e-08
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 55 4e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 55 4e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 54 7e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 54 1e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 54 1e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 53 2e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 53 2e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 53 2e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 52 3e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 51 6e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 51 6e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 50 1e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 50 1e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 50 1e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 48 4e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 44 1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 41 9e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 37 0.011
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.044
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 34 0.10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 34 0.10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 34 0.10
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 33 0.23
At2g28600.1 68415.m03476 expressed protein 31 0.54
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 31 0.94
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A... 29 2.2
At1g11920.1 68414.m01376 pectate lyase family protein similar to... 29 2.9
At4g35470.1 68417.m05041 leucine-rich repeat family protein simi... 28 5.0
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.0
At5g22180.1 68418.m02582 hypothetical protein 28 6.6
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 27 8.8
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 27 8.8
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 27 8.8
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 27 8.8
At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SD... 27 8.8
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 133 bits (321), Expect = 1e-31
Identities = 65/85 (76%), Positives = 70/85 (82%)
Frame = +2
Query: 254 SADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 433
S FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL+R TYLV
Sbjct: 258 SRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLV 317
Query: 434 LDEADRMLDMGFEPQIRKIIEQIRP 508
LDEADRMLDMGFEPQIRKI+ QIRP
Sbjct: 318 LDEADRMLDMGFEPQIRKIVSQIRP 342
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
P+RQTL+WSATWP+EV+ LA +L D + IGS L AN +I Q+
Sbjct: 342 PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQV 387
Score = 49.2 bits (112), Expect = 3e-06
Identities = 16/33 (48%), Positives = 27/33 (81%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 133 bits (321), Expect = 1e-31
Identities = 65/85 (76%), Positives = 70/85 (82%)
Frame = +2
Query: 254 SADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 433
S FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID LE TNL+R TYLV
Sbjct: 258 SRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLV 317
Query: 434 LDEADRMLDMGFEPQIRKIIEQIRP 508
LDEADRMLDMGFEPQIRKI+ QIRP
Sbjct: 318 LDEADRMLDMGFEPQIRKIVSQIRP 342
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
P+RQTL+WSATWP+EV+ LA +L D + IGS L AN +I Q+
Sbjct: 342 PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQV 387
Score = 49.2 bits (112), Expect = 3e-06
Identities = 16/33 (48%), Positives = 27/33 (81%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
+ + + +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 130 bits (313), Expect = 1e-30
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = +2
Query: 254 SADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 433
++ FG +S ++ TC++GG PK Q RDL++GVEIVIATPGRLID +E TNL+R TYLV
Sbjct: 192 ASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLV 251
Query: 434 LDEADRMLDMGFEPQIRKIIEQIRP 508
LDEADRMLDMGF+PQIRKI+ IRP
Sbjct: 252 LDEADRMLDMGFDPQIRKIVSHIRP 276
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/42 (76%), Positives = 37/42 (88%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELA 185
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
P+RQTL WSATWPKEV++L++ +L + ++ IGS L AN I Q+
Sbjct: 276 PDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQI 321
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
V + VK G+ EPTPIQ+QGWP+AM G++L+G+
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGI 142
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 117 bits (281), Expect = 8e-27
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2
Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
L + ++T + FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
E +L++ +YLVLDEADRMLDMGFEPQIRKI+++I PT R
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI-PTKR 336
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q V M+K+
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
E+ + V + G+ PTPIQAQ WPIAM G+++V + K
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 117 bits (281), Expect = 8e-27
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2
Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
L + ++T + FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
E +L++ +YLVLDEADRMLDMGFEPQIRKI+++I PT R
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI-PTKR 336
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q V M+K+
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
E+ + V + G+ PTPIQAQ WPIAM G+++V + K
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 117 bits (281), Expect = 8e-27
Identities = 57/102 (55%), Positives = 74/102 (72%)
Frame = +2
Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
L + ++T + FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295
Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
E +L++ +YLVLDEADRMLDMGFEPQIRKI+++I PT R
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI-PTKR 336
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
RQTLM++ATWPK V+K+A D L + Q+NIG++ +L AN +I Q V M+K+
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
E+ + V + G+ PTPIQAQ WPIAM G+++V + K
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 111 bits (267), Expect = 4e-25
Identities = 53/102 (51%), Positives = 72/102 (70%)
Frame = +2
Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
L + ++T + FG +S + C++GGAPK Q +++ERGV+IV+ATPGRL D L
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366
Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
E +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ PT R
Sbjct: 367 EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEV-PTKR 407
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/44 (56%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQ 639
RQTLM++ATWPKEV+K+A D L + Q+NIG++ +L AN +I Q
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQ 450
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELA 314
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
V + G+ P+PIQAQ WPIAM +++V + K
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 109 bits (262), Expect = 2e-24
Identities = 52/99 (52%), Positives = 69/99 (69%)
Frame = +2
Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
L + ++T + FG +S + TC++GGAPK Q ++LERG +IV+ATPGRL D L
Sbjct: 513 LAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL 572
Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 508
E + Q+ + LVLDEADRMLDMGFEPQIRKI+ +I P
Sbjct: 573 EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPP 611
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
P RQTLM++ATWPKEV+K+A D L + +Q+NIG + +L+AN I Q V M+K+
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKE 667
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELA 520
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
E+ + + + G+ PTPIQAQ WPIA+ +++V + K
Sbjct: 445 EILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 103 bits (246), Expect = 1e-22
Identities = 46/80 (57%), Positives = 61/80 (76%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
F + + V+ +GG P +Q R+LERGV+I++ATPGRL D LE+G +LQ +L LDE
Sbjct: 247 FSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDE 306
Query: 443 ADRMLDMGFEPQIRKIIEQI 502
ADRMLDMGFEPQIRKI++Q+
Sbjct: 307 ADRMLDMGFEPQIRKIVQQM 326
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/54 (38%), Positives = 38/54 (70%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
RQT+++SAT+P+E+++LA D+L +YI + +G + S+ I+Q FV + K+
Sbjct: 334 RQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKR 386
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
QTGSGKT A+ P I I I R G P+A++L+PTRELA
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELA 237
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 100 bits (240), Expect = 8e-22
Identities = 45/80 (56%), Positives = 60/80 (75%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
F + + V+ +GG P +Q R+LERGV+I++ATPGRL D LE+ ++Q +L LDE
Sbjct: 260 FSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDE 319
Query: 443 ADRMLDMGFEPQIRKIIEQI 502
ADRMLDMGFEPQIRKI+EQ+
Sbjct: 320 ADRMLDMGFEPQIRKIVEQM 339
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/54 (40%), Positives = 38/54 (70%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
RQTL++SAT+P+E+++LA D+L +YI + +G + S+ I+Q FV + K+
Sbjct: 347 RQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKR 399
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
QTGSGKT A+ P I I ++R G P+A++L+PTRELA
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELA 250
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/80 (55%), Positives = 59/80 (73%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
F + + V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++Q +L LDE
Sbjct: 252 FSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 311
Query: 443 ADRMLDMGFEPQIRKIIEQI 502
ADRMLDMGFEPQIRKI+EQ+
Sbjct: 312 ADRMLDMGFEPQIRKIVEQM 331
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
RQT+++SAT+P ++++LA D++ +YI + +G + S+ I Q FV+ K+
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKR 391
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
QTGSGKT A+ P I I + R G P A++L+PTRELA
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/80 (55%), Positives = 59/80 (73%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
F + + V+ +GG P +Q R+LERG +I++ATPGRL D LE+ ++Q +L LDE
Sbjct: 252 FSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 311
Query: 443 ADRMLDMGFEPQIRKIIEQI 502
ADRMLDMGFEPQIRKI+EQ+
Sbjct: 312 ADRMLDMGFEPQIRKIVEQM 331
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
RQT+++SAT+P ++++LA D++ +YI + +G + S+ I Q FV+ K+
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKR 391
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
QTGSGKT A+ P I I + R G P A++L+PTRELA
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 98.3 bits (234), Expect = 4e-21
Identities = 44/76 (57%), Positives = 57/76 (75%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
+R + V+GG K EQ ++L+ G EIV+ATPGRLID L+ + R +YLVLDEADRM D
Sbjct: 330 LRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD 389
Query: 461 MGFEPQIRKIIEQIRP 508
+GFEPQ+R I+ QIRP
Sbjct: 390 LGFEPQVRSIVGQIRP 405
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELA 314
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/46 (45%), Positives = 34/46 (73%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
P+RQTL++SAT P +V+KLA + L D I++ +G + + AN +I Q+
Sbjct: 405 PDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM-ANEDITQV 449
Score = 39.1 bits (87), Expect = 0.003
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
++ +K Y++PT IQ Q PI +SG++++G+ K
Sbjct: 238 QIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 91.5 bits (217), Expect = 5e-19
Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 3/74 (4%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMG 466
V+GG+ +Q +L+RG EIV+ TPGR+ID L + TNL+R TYLV+DEADRM DMG
Sbjct: 503 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMG 562
Query: 467 FEPQIRKIIEQIRP 508
FEPQI +I++ IRP
Sbjct: 563 FEPQITRIVQNIRP 576
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTREL 481
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
+K + Y++P PIQAQ PI MSG++ +GV K
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
P+RQT+++SAT+P++V+ LA L ++I +G + N +I QL
Sbjct: 576 PDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQL 620
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 91.1 bits (216), Expect = 6e-19
Identities = 44/79 (55%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADR 451
+R V+GG+ +Q +L+RG EIV+ TPGR+ID L + TNL+R T+LV+DEADR
Sbjct: 631 IRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 690
Query: 452 MLDMGFEPQIRKIIEQIRP 508
M DMGFEPQI +II+ IRP
Sbjct: 691 MFDMGFEPQITRIIQNIRP 709
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTREL 614
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
+K + Y++P PIQ Q PI MSG++ +GV K
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +1
Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
P RQT+++SAT+P++V+ LA L ++I +G + N +I QL
Sbjct: 709 PERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQL 753
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 87.0 bits (206), Expect = 1e-17
Identities = 43/86 (50%), Positives = 56/86 (65%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
F H R T + GG EQ + +G EIVIATPGRLID LE+ L +C Y+VLDE
Sbjct: 412 FAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDE 471
Query: 443 ADRMLDMGFEPQIRKIIEQIRPTDRL 520
ADRM+DMGFEPQ+ +++ + P+ L
Sbjct: 472 ADRMIDMGFEPQVAGVLDAM-PSSNL 496
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELA 236
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELA
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELA 402
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 7 EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
E+ + V+ GYK+P+PIQ P+ + ++++G+
Sbjct: 323 ELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGI 356
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 78.6 bits (185), Expect = 4e-15
Identities = 39/97 (40%), Positives = 56/97 (57%)
Frame = +2
Query: 203 CFGLGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 382
C L + ++ S + G +++ CV+GG+ K Q + GV+IVI TPGRL
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 383 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 493
D +E L +++VLDEADRMLDMGFE +R I+
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFIL 290
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/45 (46%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLG-DYIQINIGSLQLSANHNILQL 642
RQ +M+SATWP +V KLA++++ + I++ IGS+ L+ANH+++Q+
Sbjct: 297 RQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQI 341
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELA 236
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELA 204
Score = 34.7 bits (76), Expect = 0.058
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 37 YKEPTPIQAQGWPIAMSGKNLVGVLK 114
+++P+PIQ+ WP + G++L+G+ K
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAK 159
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 77.4 bits (182), Expect = 8e-15
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
+R+ GG R Q ++RGV IV+ATPGRL D L K +L C YL LDEADR++D
Sbjct: 257 LRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD 316
Query: 461 MGFEPQIRKIIEQIR 505
+GFE IR++ + +
Sbjct: 317 LGFEDDIREVFDHFK 331
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELA 236
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELA 235
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
+K G +PTPIQ QG P+ ++G++++G+
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAGRDMIGI 189
Score = 31.9 bits (69), Expect = 0.41
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
RQTL++SAT P +++ A L + +N+G +AN +++Q +VK K
Sbjct: 334 RQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 385
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 77.4 bits (182), Expect = 8e-15
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +2
Query: 278 YVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 457
Y+ CV+GG Q L RGV++V+ TPGR+ID +E + L YLVLDEAD+ML
Sbjct: 206 YLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265
Query: 458 DMGFEPQIRKIIEQIRPTDR 517
+GFE + I+E + PT R
Sbjct: 266 AVGFEEAVESILENL-PTKR 284
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHINNQ----PPIRR-GDGPIALVLAPTRELA 236
R +TG+GKTLA+ +P I + + RR G P LVLAPTRELA
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 499 NTPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
N P RQ++++SAT P VKKLA YL + + I++
Sbjct: 279 NLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 76.6 bits (180), Expect = 1e-14
Identities = 30/70 (42%), Positives = 49/70 (70%)
Frame = +2
Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 472
C++GG P +Q R L+ GV++ + TPGR+ID +++G NL ++VLDEAD+ML +GF
Sbjct: 209 CLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 268
Query: 473 PQIRKIIEQI 502
+ I+E++
Sbjct: 269 EDVEIILEKL 278
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 33 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIAL 209
G+++ + L + ++ R +TG+GKTLA+ +P I I RG P+ L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 210 VLAPTRELA 236
VLAPTRELA
Sbjct: 183 VLAPTRELA 191
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 75.4 bits (177), Expect = 3e-14
Identities = 28/70 (40%), Positives = 49/70 (70%)
Frame = +2
Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 472
C++GG P +Q R+L G+++ + TPGR+ID +++G NL ++VLDEAD+ML +GF
Sbjct: 221 CLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 280
Query: 473 PQIRKIIEQI 502
+ I++++
Sbjct: 281 EDVEIILQKL 290
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 200
K G+++ + L + ++ R +TG+GKTLA+ +P I I RG P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 201 IALVLAPTRELA 236
LVLAPTRELA
Sbjct: 192 QCLVLAPTRELA 203
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 71.7 bits (168), Expect = 4e-13
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
+R+ GG R Q +++GV IV+ATPGRL D L K +L C L LDEADR++D
Sbjct: 208 LRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVD 267
Query: 461 MGFEPQIRKIIEQIR 505
+GFE IR + + +
Sbjct: 268 LGFEDDIRHVFDHFK 282
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELA 236
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELA 186
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
+K G PTPIQ QG P+ +SG++++G+
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGI 140
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
RQTL++SAT P +++ A L + +N+G +AN +++Q +VK K
Sbjct: 285 RQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 336
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +2
Query: 269 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 448
H + R+ V GG+ R Q L +++V+ TPGR++ +E+G YLVLDEAD
Sbjct: 214 HHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEAD 273
Query: 449 RMLDMGFEPQIRKII 493
M D GF P+IRK +
Sbjct: 274 TMFDRGFGPEIRKFL 288
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 108 TQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELA 236
+ TGSGKTLAY+LP IV + + G P +VL PTREL+
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELS 202
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +2
Query: 284 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 463
+ V GG P Q +++GVE++I TPGR++D L K T L VLDE D ML
Sbjct: 216 KTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 275
Query: 464 GFEPQIRKIIEQI 502
GF Q+ +I + +
Sbjct: 276 GFRDQVMQIFQAL 288
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 233
TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 198
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 22 VKTMGYKEPTPIQAQGWPIAMSGKNLV 102
++T GY PTPIQ Q P A++GK+L+
Sbjct: 125 LETAGYDFPTPIQMQAIPAALTGKSLL 151
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +2
Query: 284 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 463
+ V GG P Q +++GVE++I TPGR++D L K T L VLDE D ML
Sbjct: 79 KTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 138
Query: 464 GFEPQIRKIIEQI 502
GF Q+ +I + +
Sbjct: 139 GFRDQVMQIFQAL 151
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 233
TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/86 (33%), Positives = 50/86 (58%)
Frame = +2
Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
+G + + + C++GG Q L+RGV+IV+ TPGR+ D +E+ + + VLDE
Sbjct: 197 YGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDE 256
Query: 443 ADRMLDMGFEPQIRKIIEQIRPTDRL 520
AD ML MGF + I+ ++ + ++
Sbjct: 257 ADEMLRMGFVEDVELILGKVEDSTKV 282
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 18 RCKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRR--- 188
+ K NG++ +S + R +TG GKTLA++LP + + N P +
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169
Query: 189 --GDGPIALVLAPTRELA 236
G P LVL PTRELA
Sbjct: 170 GYGRSPSVLVLLPTRELA 187
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/74 (41%), Positives = 42/74 (56%)
Frame = +2
Query: 287 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 466
+ CV GG RE R L+ GV +V+ TPGR+ D L++ + VLDEAD ML G
Sbjct: 139 HACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRG 197
Query: 467 FEPQIRKIIEQIRP 508
F+ QI I + + P
Sbjct: 198 FKDQIYDIFQLLPP 211
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 472
V GG ++ +A L +GV +++ATPGRL+D LE + + +LV+DEADR+L+ FE
Sbjct: 260 VIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFE 319
Query: 473 PQIRKIIEQIRPT 511
++KI+ + T
Sbjct: 320 EDLKKILNLLPKT 332
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 203
K+ G R + + + ++ +TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 204 ALVLAPTRELA 236
LV+ PTRELA
Sbjct: 229 VLVICPTRELA 239
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 16 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
+ +K MG+ T IQA+ P M G++++G +
Sbjct: 167 KSIKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.9 bits (141), Expect = 8e-10
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +2
Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GG R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L + F+P I
Sbjct: 258 GGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSI 317
Query: 482 RKIIEQIRPTDR 517
++I Q P R
Sbjct: 318 EELI-QFLPESR 328
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ ++ +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 162 KRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
+ G ++ + + + R + G+GKT A+ +P + I+ + + + A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225
Query: 207 LVLAPTRELA 236
++L PTRELA
Sbjct: 226 VILVPTRELA 235
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
+RQ LM+SAT+P VK + YL IN+
Sbjct: 327 SRQILMFSATFPVTVKSFKDRYLKKPYIINL 357
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/72 (37%), Positives = 44/72 (61%)
Frame = +2
Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GG R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+P +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
Query: 482 RKIIEQIRPTDR 517
++I Q P +R
Sbjct: 288 EELI-QFLPQNR 298
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ ++ +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 132 KRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
+ G ++ + + + R + G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 207 LVLAPTRELA 236
++L PTRELA
Sbjct: 196 MILVPTRELA 205
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
NRQ LM+SAT+P VK + +L IN+
Sbjct: 297 NRQFLMFSATFPVTVKAFKDRHLRKPYVINL 327
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/72 (37%), Positives = 44/72 (61%)
Frame = +2
Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GG R+ L + V +++ TPGR++D +KG L+ C LV+DEAD++L F+P +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
Query: 482 RKIIEQIRPTDR 517
++I Q P +R
Sbjct: 288 EELI-QFLPQNR 298
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ ++ +G+ G+++P+PIQ + PIA++G +++ K K
Sbjct: 132 KRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
+ G ++ + + + R + G+GKT A+ +P + I+ + + A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195
Query: 207 LVLAPTRELA 236
++L PTRELA
Sbjct: 196 MILVPTRELA 205
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
NRQ LM+SAT+P VK + +L IN+
Sbjct: 297 NRQFLMFSATFPVTVKAFKDRHLRKPYVINL 327
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +2
Query: 233 STTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 412
S T A HT+ + C+ GG E + LERGV V TPGR+ D +++G+
Sbjct: 104 SQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQT 162
Query: 413 QRCTYLVLDEADRMLDMGFEPQI 481
+ LVLDE+D ML G + QI
Sbjct: 163 KAVKLLVLDESDEMLSKGLKDQI 185
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +2
Query: 287 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 466
+ CV GG RE R L+ GV +V+ TPGR+ D L + + VLDEAD ML G
Sbjct: 139 HACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRG 197
Query: 467 FEPQIRKIIEQIRP 508
F+ QI I + + P
Sbjct: 198 FKDQIYDIFQLLPP 211
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/68 (44%), Positives = 38/68 (55%)
Frame = +2
Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 472
CV GG RE R L+ GV +V+ TPGR+ D L + + VLDEAD ML GF+
Sbjct: 143 CV-GGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFK 201
Query: 473 PQIRKIIE 496
QI I +
Sbjct: 202 DQIYDIFQ 209
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 DFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL-EKGTTNLQRCTYLVL 436
+ G + +R + + GG +Q +L +G +++IATPGRL+ L E L+ Y+V
Sbjct: 120 ELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVF 179
Query: 437 DEADRMLDMGFEPQIRKIIEQI 502
DEAD + MGF Q+ +I+ Q+
Sbjct: 180 DEADSLFGMGFAEQLHQILTQL 201
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+TGSGKT A+++P + + P +G G AL+L+PTR+LA
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLA 111
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
V +K GYK PTPIQ + P+ +SG ++V + +
Sbjct: 39 VFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/80 (35%), Positives = 43/80 (53%)
Frame = +2
Query: 269 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 448
H + + C+ GG E R LE GV +V TPGR+ D +++ + + L+LDE+D
Sbjct: 129 HANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESD 187
Query: 449 RMLDMGFEPQIRKIIEQIRP 508
ML GF+ QI + + P
Sbjct: 188 EMLSRGFKDQIYDVYRYLPP 207
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 57.6 bits (133), Expect = 7e-09
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Frame = +2
Query: 230 VSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN 409
+ T N A H+ V + V GG +R +A+ + G +VIATPGRL+D L+
Sbjct: 175 IQTKNVAEELLKHHSQTV--SMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAF 232
Query: 410 L-QRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDRL*CGQLLGPKK*RNLLRIT 574
+ + LV+DEADR+L+ FE + KI++ + T + K ++L R++
Sbjct: 233 IYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVS 288
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 200
K+ G Q + + K+ +TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 201 IALVLAPTRELA 236
+V+ PTRELA
Sbjct: 164 -VIVICPTRELA 174
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/64 (35%), Positives = 40/64 (62%)
Frame = +2
Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GG ++ L + V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
Query: 482 RKII 493
+I
Sbjct: 295 EHLI 298
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ E+ G+ G++ P+PIQ + PIA++G++++ K K
Sbjct: 139 KRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/64 (35%), Positives = 40/64 (62%)
Frame = +2
Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GG ++ L + V +++ TPGR++D +KG L+ C+ LV+DEAD++L F+P +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
Query: 482 RKII 493
+I
Sbjct: 295 EHLI 298
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
+ E+ G+ G++ P+PIQ + PIA++G++++ K K
Sbjct: 139 KRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRM 454
+R + GG + +Q L + +++ATPGRL D + KG + L+ YLVLDEADR+
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFS-LKSLKYLVLDEADRL 176
Query: 455 LDMGFEPQIRKIIEQIRPTDR 517
L+ FE + +I+E+I P +R
Sbjct: 177 LNEDFEKSLNQILEEI-PLER 196
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 1 RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
R E+ + + +G+K P+ IQA+ P A+ GK+++G+
Sbjct: 17 REELVKACERLGWKNPSKIQAEALPFALEGKDVIGL 52
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +3
Query: 21 CKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI-----NNQPPIR 185
C+ G + + L + K+ QTGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 186 RGDGP--IALVLAPTRELA 236
R P A VL+PTRELA
Sbjct: 84 RRPDPAFFACVLSPTRELA 102
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMG 466
+ GG +Q R L+ EIV+ATPGRL + + EK L ++ VLDEADRM++ G
Sbjct: 313 IVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERG 372
Query: 467 FEPQIRKIIEQIRPTDR 517
+++ I++ + TD+
Sbjct: 373 HFRELQSILDLLPVTDK 389
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFE 472
V GG K ++ L +G+ I+IATPGRL+D L+ + + + +++ DEAD +L++G+
Sbjct: 139 VMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYG 198
Query: 473 PQIRKIIE 496
+I +II+
Sbjct: 199 KEIEQIIK 206
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTREL 233
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTREL 116
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 31 MGYKEPTPIQAQGWPIAMSGKNLV 102
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFE 472
+ GG REQ L +IV+ATPGR+ID L + +L L+LDEADR+L GF
Sbjct: 272 IVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFA 331
Query: 473 PQIRKII 493
+I +++
Sbjct: 332 TEITELV 338
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 25 KTMGYKEPTPIQAQGWPIAMSGKNL 99
+T+GYK+PTPIQA P+A++G++L
Sbjct: 183 ETLGYKKPTPIQAACIPLALTGRDL 207
Score = 34.7 bits (76), Expect = 0.058
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
TGSGKT A+ LP + + +P +R L+L PTRELA
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELA 251
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRM 454
V + + GG + + +E G ++I TPGRL D +E+ + + L+LDEADR+
Sbjct: 120 VNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRL 179
Query: 455 LDMGFEPQIRKIIEQI 502
L+MGF+ Q+ II ++
Sbjct: 180 LEMGFQRQVNYIISRL 195
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 87 WKEFSWRTQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELA 236
+K+ + TGSGKTLA+++P + + PP + + ++++PTREL+
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELS 103
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRM 454
V + + GG LE G ++I TPGRL D +++ + + L+LDEADR+
Sbjct: 120 VNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRL 179
Query: 455 LDMGFEPQIRKIIEQI 502
LDMGF+ Q+ II ++
Sbjct: 180 LDMGFQKQVNYIISRL 195
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELA 236
TGSGKTLA++LP I I N+ PP + + ++++PTREL+
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELS 103
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +2
Query: 320 EQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 490
EQ R +I++ATPGRL D +E T L+ LVLDEAD +LDMGF I +I
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233
Query: 491 IEQIRPTDR 517
I + P +R
Sbjct: 234 ISAV-PKER 241
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGD--G 197
KD G + + L K+ + +TG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 198 PI-ALVLAPTRELA 236
PI ALV+ PTRELA
Sbjct: 130 PILALVICPTRELA 143
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +2
Query: 296 VFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 463
V GG + R L++ +I++ATPGRL D ++ + T L LVLDEAD +LDM
Sbjct: 191 VIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDM 250
Query: 464 GFEPQIRKIIEQI 502
GF +I +II +
Sbjct: 251 GFRREIERIIAAV 263
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +3
Query: 90 KEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELA 236
K+ + +TG+GKT+A++LP+I + PP R + I LV+ PTRELA
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELA 169
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Frame = +2
Query: 338 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
E G ++I TPGRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL 188
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELA 236
TGSGKTLA++LP I I N+ PP + + ++++PTREL+
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELS 104
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +2
Query: 296 VFGGAP-KREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 463
V GG EQ R +I++ATPGRL D +E + T L LVLDEAD +LDM
Sbjct: 493 VIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDM 552
Query: 464 GFEPQIRKIIEQI 502
GF I +II +
Sbjct: 553 GFRRDIERIIAAV 565
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 200
KD G + + L K+ + +TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 201 --IALVLAPTRELA 236
I LV+ PTRELA
Sbjct: 458 PIIVLVVCPTRELA 471
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 290 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 460
T + G K +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD
Sbjct: 439 TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 498
Query: 461 MGFEPQIRKIIE 496
+GF + KII+
Sbjct: 499 LGFRRDVEKIID 510
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 30 NGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 197
+G+ + + L++ K+ + +TG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 198 PIALVLAPTRELA 236
AL+L PTRELA
Sbjct: 406 IFALILCPTRELA 418
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 302 GGAPKREQARDLERGVE-IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 478
GGA + Q L++ IV+ TPGR+ + + G + C +LVLDE D +L F
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFRED 287
Query: 479 IRKIIEQI 502
I +I+E +
Sbjct: 288 IHRILEHV 295
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHI 164
++ TGSGKTLAY+LP + I
Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +2
Query: 290 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 460
T + G + +Q R +I+IATPGRL+D +E T+ L ++DEAD +LD
Sbjct: 486 TLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 545
Query: 461 MGFEPQIRKIIE 496
+GF+ + KII+
Sbjct: 546 LGFKRDVEKIID 557
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +3
Query: 30 NGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 197
+G+ + + L++ K+ + +TG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 198 PIALVLAPTRELA 236
L+L PTRELA
Sbjct: 453 IFVLILCPTRELA 465
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN---LQRCTYLVLDEADR 451
+R + + GG Q L IVI TPGR+ LE R +LVLDEADR
Sbjct: 155 LRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADR 214
Query: 452 MLDMGFEPQIRKIIE 496
+LD+GF+ ++R I +
Sbjct: 215 VLDVGFQDELRTIFQ 229
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 21 CKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP 200
CK+ G+++ + + ++ QTGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 201 IALVLAPTRELA 236
ALV+ PTRELA
Sbjct: 128 FALVVTPTRELA 139
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 25 KTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
K +G ++PTP+Q P ++G++++G+
Sbjct: 74 KELGMRKPTPVQTHCVPKILAGRDVLGL 101
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 284 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-D 460
R+ V GG +R Q +LE+GV+++IATPGR + +G L +LDE D + D
Sbjct: 482 RSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGD 541
Query: 461 MGFEPQIRKII 493
FE ++ +I
Sbjct: 542 DEFEAALQNLI 552
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELA 236
Q+GSGKTLAY++P I + Q + G P +VL PT ELA
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELA 464
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Frame = +2
Query: 326 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 499
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L ++ + +++
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQL 217
Query: 500 IRPTD 514
+ +D
Sbjct: 218 TQTSD 222
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLA 107
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Frame = +2
Query: 194 WSDCFGLGAYQRVSTTNSASSADFGHTSYVRNTCVF------GGAPKREQARDLERGVEI 355
WS G+G +S T ++ FG + V F GG + ++ + I
Sbjct: 138 WSPEDGVGCII-ISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNI 196
Query: 356 VIATPGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
++ PGRL+ +++ T N + + L+LDEADR+LD F+ Q+ II Q+
Sbjct: 197 LVCAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQL 246
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +3
Query: 45 TDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 224
TD S++ + + ++ +TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 225 RELA 236
RELA
Sbjct: 153 RELA 156
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +1
Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKKIN 678
+RQTL++SAT K+VK LA L D I++ + ++A L + + ++KK++
Sbjct: 249 HRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 33 GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIAL 209
G+++ S + K+ R +TGSGKTLAY+LP + + + + ++ P A
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 210 VLAPTREL 233
+L P+REL
Sbjct: 125 ILVPSREL 132
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 350 EIVIATPGRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 490
EI+++TP + G T + + LVLDEAD +L G+E +R +
Sbjct: 174 EILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSV 224
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Frame = +2
Query: 338 ERGVEIVIATPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIEQIR 505
+R +I+++TP L++ +E K L+ RC Y+V DEAD +L F+ QI ++I +R
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLR 266
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 24 KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINN 170
+D+G R + + K+ +TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
TGSGKT A+I P ++ + DG A++L+P RELA
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELA 223
Score = 34.3 bits (75), Expect = 0.076
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 10 VQQGVKTMGYKEPTPIQAQGWPIAMSGK 93
+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 350 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 496
+++I+TP RL ++ +L + YLVLDE+D++ + QI +++
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 353 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
IV+ TPGR++ + +L+ + +LDE D+ML+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 502 TPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
TP+ +Q +M+SAT KE++ + + ++ D ++I + H ++Q I + M+K
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 275
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 203
D+G + + + + + + ++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 204 ALVLAPTRELAXXXXXXXXXXDTHL 278
ALVL TRELA T+L
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 353 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
IV+ TPGR++ + +L+ + +LDE D+ML+
Sbjct: 86 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 121
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 502 TPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
TP+ +Q +M+SAT KE++ + + ++ D ++I + H ++Q I + M+K
Sbjct: 136 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 192
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 353 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
IV+ TPGR++ + +L+ + +LDE D+ML+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 502 TPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
TP+ +Q +M+SAT KE++ + + ++ D ++I + H ++Q I + M+K
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 275
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 27 DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 203
D+G + + + + + + ++G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 204 ALVLAPTRELAXXXXXXXXXXDTHL 278
ALVL TRELA T+L
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 305 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEPQI 481
GAP + + +VI TPG L ++ L LV DEAD ML GF
Sbjct: 203 GAPAATRGAPVS--AHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDS 260
Query: 482 RKIIEQI 502
KI++ I
Sbjct: 261 LKIMKDI 267
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 105 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
+ GSGKT ++L + ++ P +R P AL + PTRELA
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELA 175
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 305 GAPKREQARDLER-GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GAP Q L+ E ++ATP RL++ + ++ + LV+DE + G+ +
Sbjct: 232 GAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAV 291
Query: 482 RKIIEQI 502
+ I + I
Sbjct: 292 KSIKQAI 298
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +3
Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
QTGSGKTL Y+L IN Q A+++ PTREL
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTREL 156
>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
(AOP1.2) identical to GI:16118887; contains PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 531 SYLAQRSEETC*GLLGRLHSDQYRIITTFRKSQHSS 638
S L + C L GRLHS +R+I T +K+++S+
Sbjct: 230 SVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYST 265
>At1g11920.1 68414.m01376 pectate lyase family protein similar to
pectate lyase GI:14289169 from [Salix gilgiana]
Length = 384
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 60 SSRLADSYVWKEFSWRTQTGSGKTLAYILPA 152
+ R+ Y WK + WRT K AY +P+
Sbjct: 313 TKRIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343
>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
to Leucine-rich repeat protein SHOC-2 (Ras-binding
protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
contains Pfam PF00560: Leucine Rich Repeat domains
Length = 549
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 513 SVGRICSMIFLICGSNPISNIRSASSR 433
S+G + ++++L GSN +S++ SA SR
Sbjct: 287 SIGELLNLVYLNLGSNQLSSLPSAFSR 313
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 244 ICCANSLVGAKTKAIGPSPLRI 179
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At5g22180.1 68418.m02582 hypothetical protein
Length = 169
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 571 YLGDYIQINIGSLQLSANHNILQL*IFVKNMKKKI 675
Y GD + +GSL + N + +L + + MKK++
Sbjct: 94 YNGDDVYAKLGSLNAAGNQRVFELDLKLSTMKKQL 128
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 110 SNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 253
++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 66 ASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 371 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 371 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 64 QGWPIAMSGKNLVGVLKRVPAKRW 135
+GW I + K L G +K VP + W
Sbjct: 568 EGWTIPLFKKGLDGFIKEVPNRMW 591
>At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SDR)
family protein similar to carbonyl reductase GI:1049108
from [Mus musculus]
Length = 295
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 37 YKEPTPIQAQGWPIAMSG----KNLVGVLKRVPAKR 132
YKE +Q +GWP MSG K V L RV AKR
Sbjct: 203 YKEGA-LQVKGWPTVMSGYILSKAAVIALTRVLAKR 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,391
Number of Sequences: 28952
Number of extensions: 358236
Number of successful extensions: 1150
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -