Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060089.seq
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 3e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 1e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 59 5e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 48 1e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 2e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 3e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 41 1e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 40 3e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 40 5e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 39 8e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 39 8e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 38 0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.002
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 37 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 0.002
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 37 0.003
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.007
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 34 0.017
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 34 0.017
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.052
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 31 0.12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.12
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 0.16
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.64
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 5.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 7.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 96.7 bits (230), Expect = 3e-21
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +3
Query: 255 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYV 434
W + +L PF K+FY H V RS EV YR E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 435 QQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ VK +G++ PTPIQ Q WP+AMS R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160
Score = 75.8 bits (178), Expect = 6e-15
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA IQQ F
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 61.7 bits (143), Expect = 1e-10
Identities = 25/45 (55%), Positives = 36/45 (80%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXI 666
+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA I
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHE-VTVSGVEVXNPIQYFEEANFPDYVQQ 440
++ + F K+FY + SP EV+ R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++GY++PT IQAQ P S R
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 59.3 bits (137), Expect = 5e-10
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Frame = +1
Query: 502 LCRKEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQXIQ 669
L RK+ +TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQ IQ
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 43.2 bits (97), Expect = 4e-05
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +3
Query: 327 PYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
P + + ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +
Sbjct: 225 PRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
Query: 507 SER 515
+
Sbjct: 285 QRK 287
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQXIQQVA 678
QTGSGKTLAY+LP + + P R G A+++APTREL Q I VA
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 KEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQXIQQV 675
K+ + +TGSGKT AY++P + + Q I G AL+L PTRELAQ + V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
TGSGKTLAY+LP + + G G AL++APTRELA I V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 29.5 bits (63), Expect = 0.48
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQXIQQ 672
QTGSGKT A+ LP I + NN P A+VLAPTRELA I +
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132
Score = 32.3 bits (70), Expect = 0.068
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+E D + + + +G+K PTPIQ + P+ +++R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
+TGSGKT A+++P I H+ + AL+L+P RELA +V DF
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDF 162
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 657
+TGSGKTLA+I+P I ++ + DG ALV++PTRELA
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELA 124
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 38.7 bits (86), Expect = 8e-04
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QXIQQVAA 681
+TGSGKT A+ LP I + P G AL+L PTRELA Q +Q AA
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAA 97
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
PI F+E + +++G+K YKEPTPIQA WP ++ R
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 657
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELA 249
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +1
Query: 427 IMCNKV*RQWVTKNRRLFKLKAGR*LCRKEFSWRXQTGSGKTLAYILPAIVHINNQPPIR 606
I+C + +Q +T+ + + +++ TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 607 RGDGPIALVLAPTRELAQXIQQVA 678
G A+++APTREL + I + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 532 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
+TGSGKTLA+++P I ++ P R G G ++++PTRELA I VA +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 37.1 bits (82), Expect = 0.002
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQXIQQ 672
+ TGSGKTLA+ +P + H +R D ALV+APTRELA I Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI S R
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
Score = 29.9 bits (64), Expect = 0.36
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Frame = +1
Query: 532 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQXIQQ 672
QTGSGKT ++ P + + + P P+ + G P L+LAPTREL I +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
Query: 673 VAADF 687
+ F
Sbjct: 274 ESRKF 278
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
TGSGKT A+I+P + + +P ++ L+L PTRELA VA
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
+TG+GKTLA++L A + P +++L+PTRELA I + A
Sbjct: 84 KTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 34.3 bits (75), Expect = 0.017
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
Q+G+GKT + + + I+ +++ AL+LAPTRELAQ IQ+V
Sbjct: 64 QSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKV 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
Q+G+GKT A+ L + ++ P P A+ LAP+RELA+ I V +
Sbjct: 161 QSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTE 206
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.7 bits (71), Expect = 0.052
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
R + G+GKT A+++P++ ++ + + L+L PTRELA QV
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQV 131
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LAXS-NG 539
FE+ + G+ G++ P+PIQ + PIA+S R LA + NG
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNG 91
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTREL 654
TGSGKTL+Y++P + ++++ P +R +V+ PTREL
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTREL 217
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
TG GK+L++++PA++ Q P + + LVL P L Q
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
TG GK+L++++PA++ Q P + + LVL P L Q
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 354 NHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 8 NVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
Score = 28.7 bits (61), Expect = 0.84
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
Q+G+GKT + + + I+ +R AL+L+PTRELA IQ V
Sbjct: 66 QSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNV 108
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.64
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +2
Query: 158 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQMGFCF 268
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 102 IIPVTR-HDXFSDLVEDVYLNYGFFLTQ 22
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 456 PLSLHLVAHNQENL--LLQSIE 397
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,009
Number of Sequences: 5004
Number of extensions: 49306
Number of successful extensions: 170
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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