Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060088.seq
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 122 3e-28
07_01_0578 + 4295386-4296489,4297394-4297507 118 4e-27
10_02_0199 + 6668902-6669293,6669825-6669882 33 0.20
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 31 1.1
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.4
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 30 1.4
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 30 1.9
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 30 1.9
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.5
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 2.5
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 29 2.5
05_03_0163 + 9070781-9071320 29 3.3
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 28 7.6
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 28 7.6
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.6
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 122 bits (293), Expect = 3e-28
Identities = 56/100 (56%), Positives = 63/100 (63%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXX 433
+ESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 67 AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIA 126
Query: 434 XXXXXXXXXXXXXXQARGHIIEKIPSFPWL*PDKVQEINK 553
ARGH IE +P FP + D ++ I K
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEK 166
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 66 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 242
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 243 HQTS 254
HQTS
Sbjct: 63 HQTS 66
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 118 bits (284), Expect = 4e-27
Identities = 54/100 (54%), Positives = 61/100 (61%)
Frame = +2
Query: 254 SESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXX 433
+ESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 68 AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVA 127
Query: 434 XXXXXXXXXXXXXXQARGHIIEKIPSFPWL*PDKVQEINK 553
ARGH IE +P P + D + I K
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEK 167
Score = 61.3 bits (142), Expect = 7e-10
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = +3
Query: 75 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 248
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 249 TS 254
TS
Sbjct: 66 TS 67
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/47 (42%), Positives = 23/47 (48%)
Frame = +2
Query: 224 REQGGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 364
RE GG + +SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGGA----QSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 535 FVGLQPREAGNLFNNVSSSLNERWDAGSSNGCRQGRS 425
+V ++PRE G+ V S+ NE WD ++G G +
Sbjct: 670 YVVVEPRERGDNEQRVVSAYNEAWDVAGADGRAGGEA 706
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +2
Query: 38 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 193
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Frame = +2
Query: 200 QELEAALLREQGGWSPNQSESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 364
+++ A ++GG S ++S+ G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGS-DKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 365 MFAPTKP-WR 391
M P P WR
Sbjct: 123 MLRPGFPKWR 132
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 162 RPDLVNDVHVSMSKNSRQP--YCVSKEAGHQTSLNHGVLD 275
RP + DV S S +S P SK++GH L HG +D
Sbjct: 38 RPSSITDVSRSCSSSSSSPPRSLSSKQSGHADVLAHGAVD 77
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 209 EAALLREQGGWSPNQSESWGTGRAV 283
EAALLR G W+ + WG G V
Sbjct: 367 EAALLRAAGDWARGAGQRWGVGDVV 391
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 38 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 193
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -3
Query: 532 VGLQPREAGN--LFNNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 389
+ Q R++ N N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 89 MSFQARDSSNSKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 224 REQGGWSPNQSESWGTGRAVARIPRVRGGGT--HRSGQGAF 340
R + GW +Q++ + + R P +GGG R GQG F
Sbjct: 1121 RREQGWDAHQAQVGAQHQNLPRFPPQQGGGNIGERQGQGQF 1161
>05_03_0163 + 9070781-9071320
Length = 179
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 224 REQGGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQG 334
R GGWS ++E WG G ++ GGG RS +G
Sbjct: 15 RGAGGWS-QRAEGWGGGGGRSQRAEGGGGGGGRSRRG 50
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 245 PNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 388
P + G G A + RV GGG+ G+GA + G + W
Sbjct: 77 PERRRQEGAGGRGAGVRRVEGGGSGAVGEGARAAVLGGAATIGARRLW 124
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 275 VQYPMIQTGLVTSLLAHAVGLPRVL 201
V+ P +TG S LA AVG+PRVL
Sbjct: 89 VENPHKKTGYSISELAEAVGIPRVL 113
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 380 SWGRTYVHHDTCYRRHPDRTYEYHH 306
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419,388
Number of Sequences: 37544
Number of extensions: 415932
Number of successful extensions: 1587
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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